RNA id: TU15538



Basic Information


Item Value
RNA id TU15538
length 550
RNA type TUCP
GC content 0.43
exon number 2
gene id G12587
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14437771 ~ 14438606 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGTGCACGTTCTCCATGGCTGCTACCTCGGCTAGGGCAGCCAGACTGAAGAATGCAGGGACGGGGGACACACCGGGCCGGTCCGGGGTGATACTGCCCTCCAGCTGTGACGGGGTGTCTGTGTAGCACCCTTCTTCATTGCATAAAGTCTCTTGGGTTAATGGCTTGTCATCCTGGTCCTGCGCCAGCTCCTTGGCTTTGTCATCCACCTGCTGGTGACACCCTGCCATCCGCACTGCGCACTAGGTGTGTAATCTTGCTCTTCCTCGCCTTCCTCTTCTGGCTGCCCACCAGCATCTCCGCAGCCCCCAGGGCCTCCAGGGAAGCCATGCTGGGGGGCAGTGCGAGCGTGGCCTTCTGGGCGGCGTCCATCGTGGCGTTCTCTTGTGCTGCTATGGCTGCGGGCAAAGACACGGGTCACAATCTGCTACACTGGGGGGCGGGAGAGCCCTGGTAGTTAACACTTTATTCCCCTGTTATGCATTTGTGCTTTCTGTAGATTTATTCCTGCAGTCAGCTCATTGTCTGCTCTGTTTTCTTAACTATCCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15511 lncRNA upstream 39357 14397249 ~ 14398414 (+) True G12566
TU15493 lncRNA upstream 53114 14383905 ~ 14384657 (+) True G12549
TU15409 lncRNA upstream 241137 14194935 ~ 14196634 (+) True G12489
TU15406 lncRNA upstream 253085 14182605 ~ 14184686 (+) True G12487
TU15299 lncRNA upstream 606884 13829734 ~ 13830887 (+) True G12406
TU15541 lncRNA downstream 10206 14448812 ~ 14449212 (+) True G12589
TU15543 lncRNA downstream 12904 14451510 ~ 14451754 (+) True G12591
TU15565 lncRNA downstream 137981 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA downstream 137981 14576587 ~ 14581329 (+) True G12605
TU15607 lncRNA downstream 341706 14780312 ~ 14783535 (+) False AMCG00016288
AMCG00016278 mRNA upstream 54092 14348972 ~ 14383679 (+) True AMCG00016278
AMCG00016279 mRNA upstream 138992 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016271 mRNA upstream 155181 14270317 ~ 14282590 (+) True AMCG00016271
AMCG00016272 mRNA upstream 173698 14258609 ~ 14264073 (+) True AMCG00016272
AMCG00016273 mRNA upstream 204143 14223888 ~ 14233628 (+) True AMCG00016273
AMCG00016285 mRNA downstream 63528 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016286 mRNA downstream 101835 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016288 mRNA downstream 306710 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016292 mRNA downstream 379269 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016290 mRNA downstream 392121 14830727 ~ 14843857 (+) True AMCG00016290
TU15237 other upstream 800770 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 805974 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 810060 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1655907 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 2566036 11868825 ~ 11871735 (+) True G11921
TU15937 other downstream 2045749 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2045749 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2045749 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2678187 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9641411 24080017 ~ 24110182 (+) False G14057

Expression Profile