RNA id: TU15566


Basic Information

Item Value
RNA id TU15566
length 2891
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G12605
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14576587 ~ 14615709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaaaaacacacCCAGCACTACGTTTTCTGGagtttattcttttttcttcaaaatgtacactttttattttaaacaaaagtacaaaaacaaaaatcagtatTTACAGTACCAGTATGGCCTTCTAAttgttttcccccctctttGGTTTCACTGCTGACCTGAAcggatgttttaaaatgaacagaaaatgcagaacaattaaaaacagcttgtcaacaatgttaaagaaaaacTCCAGTAGCACATCTGCAAGATCTTCTCCagaggacttttttttttttttttttggtttactttTTATAGAAAAACTCACTGAAGGGGAAAAAGGGTTTAAACTTTATACATAACTTAGTACTGCTTTGCCTGTCAGTTCTGAGTGAAGGCTAAAACCTTCgagtgtacagtacagcacagtaccaTCCAGAGACCTACATGATATCTGTTCACAATGTCTTATACCTACCTAATGAATGCTGAAGCACTGCTAGACTCGTGTCCCTTACAGTATAAATAGTGCCGAAAACAAGCTAACCATCCCGAtccaaaatatttacagtggACCGTAAACTAATGTGAACACAGTGTGTATAATCACAGCCCGAATTGCGCCACTCGAACCCGACGTAGTGAGGGGCGCGACACCTGGCAGTTTACATGCGTAGTGCGTGACAAGAAAAACCTTGATAGGAAACAAAAGTGTGCGCGTGGAGAGACCTCAGCGctctagtgtagtgctacagtCGCGATGCAAACCGCGTCCAATGATTAGAGACAACATGATGACCAGGGGCTGGGGGGGCGGAGGTAAGGGGCAGCAGCTACTGACCAGAGAGTCCTTTTACAGACGTTCAAAACCACTCCGCAGCCGGGTCTCTAACACTGCTAGTCCAGCCACACAACAAGCAGTTgccttacattaaaataaatacaaaaatgttccAAACAGGGGCCTGAACTCTCAGGTTAATTTTTATTCTCTTCAGATGGAACTGTTCTAGCATCTGTGCTTTTTATGGATGCTAGttaggagagagagggaaaaaaccCATTTCAGTcaagaaatatgaaaagaatCCCACaccaaatgtatgtttatatcagaggaggaggggagcgTTAAAACTCGGCGAAGTTTAAAACCGTTATGTGAAGACAAGAACGCATGCGGTCCGACACGAACAAAAGTGTAACAGCAGTGAAGTCTTCAGTCTCCGTCAAATGTACGAAACCGGTCGGCCCGAAGAACGATAATGGCCACAGCtaaccggggggggggggggggggggggggggggggggggggggggggggggtgatctGGCAGCGGTCGGATACGATTCTGCTCGCCCGTGAAATTCACATACTTATATGGATGTCAATAGTGTACCgagaatttacatttttactaaagcagaaaaaaatataaacaaaaggaGCTGAACAAAACAGGAAACCCACTGAACCAACAAATAGTGTATCAAACAAAGGCATTCACCAGGAACACAAggagggaaaaacaacaaaagtttcAGTGCAGACTCAGGGgagaggggcgggggggcaaaaaaaaaatccatatacaacacaaatatttccattgagcttttctttaaatgttggCGGTAGTTACGCTAATTCTGTACAGTTCTGGCTTGTCTTTAAAATGGTTTCCACTGAACGTGCTGTGCGTTAAAAGCTTGAAGGATGGCGTCCAATCAAATGGCTTTCCAgatagtttgtgtgtttgtgtcattcGTTTGCTTTTTCTCTAGACAGCAAGTCCAATGTGAAAGGCATCTCGTTACGGCTTCTTCCCTCATCTCTCCACTGCCACCGTGGTCTCTACACTTCTGCCTTGTGGTTGTTCTCCTCCAGCTTTTTGCTCTCCTCTGAAGTTCCAGCTTCCTTCTCTCCGGTTTTCCAGGTTCCTtgtctgaaagagagagagagagagagagagagagagagagagagggagctggCAGGCGGTGCCGGTGCCGGTGACCCGGGTGTTGAAGTGCAGGCGTACTTACAAGATGACACGCTGATGGAGCGCTCGTGCTCGCCCAGCTTGTTGCTGGCTGTGCAGGTGACAGTGACATTTCCCGGGGGAACCACAGTGATGGTGTGGGTGAACTTTCCGTTGATGTAGGGGCTCTCCTTCTCCTGTGGAGCAGCAAATACACACAGTCACGTGATCAGCACACCGTCATTCGTATCGCAATGAAACACACCACTGTACTTGGTCCGTTTAATGATATTTCATGCTCCTCTGCCCAGCCCTGTAGTAACTGCAGTTTGCAGTCATAATTCTTTTCTGCCACCAGAGGGCAGTCAGAGGCCTCAGCCATTGTTCTAACTGTAGAGCCAGCTAGTTCCAACTGTTGGCCACACCCAGGACTGTAACTAACAAGCCCGGAGGCGCGTCAATACCCAGCTCACAGAAACAGCCAGGCTGGTCACAATTAGTTTTGCCACAGCAGAACAGGTAGAGCCGTTCTTAAAATCTATTTCAACATTGATTGGTAAATCTATTTTAACATTGATTGGTTTTGTGCCCTCAAGTTTACATATTAAGTTACGAGGGTGGCAACAGAAAACCAGGCAGACAGATAAGACAGATAAGACAATCTTTGAGAAAATGATGAAACATCCAACGGCTCCTCAGAACACCTGCTGTTCCCATTTCTAATATAAACACATCACTGGGTTTCACTCCTCTGGACAAAGcattcatttttgctttttaaaaggaTCTAGACTCTCTTCCCCCCAGGAGAAAGGGTTGAGAAATGGCATTTGAGCCACTGGCCGCACAGAGCACTTTTCTGCAGGCAGCTCAGTCATACACAGTAATATAGAGACAGGCGAGGCTAGGAACAGCTCAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15543 lncRNA upstream 124833 14451510 ~ 14451754 (+) True G12591
TU15541 lncRNA upstream 127375 14448812 ~ 14449212 (+) True G12589
TU15511 lncRNA upstream 178173 14397249 ~ 14398414 (+) True G12566
TU15493 lncRNA upstream 191930 14383905 ~ 14384657 (+) True G12549
TU15409 lncRNA upstream 379953 14194935 ~ 14196634 (+) True G12489
TU15607 lncRNA downstream 198983 14780312 ~ 14783535 (+) False AMCG00016288
TU15728 lncRNA downstream 882748 15464077 ~ 15464312 (+) True G12712
TU15803 lncRNA downstream 1159857 15741186 ~ 15743647 (+) True G12763
TU15864 lncRNA downstream 1338254 15919583 ~ 15924725 (+) True G12816
TU15957 lncRNA downstream 1951775 16533104 ~ 16533381 (+) True G12886
AMCG00016286 mRNA upstream 1038 14540441 ~ 14575549 (+) True AMCG00016286
AMCG00016285 mRNA upstream 72896 14502134 ~ 14503691 (+) True AMCG00016285
AMCG00016278 mRNA upstream 192908 14348972 ~ 14383679 (+) True AMCG00016278
AMCG00016279 mRNA upstream 277808 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016271 mRNA upstream 293997 14270317 ~ 14282590 (+) True AMCG00016271
AMCG00016288 mRNA downstream 163987 14745316 ~ 14782036 (+) True AMCG00016288
AMCG00016292 mRNA downstream 236546 14817875 ~ 14827375 (+) True AMCG00016292
AMCG00016290 mRNA downstream 249398 14830727 ~ 14843857 (+) True AMCG00016290
AMCG00016291 mRNA downstream 263507 14844836 ~ 14845843 (+) True AMCG00016291
AMCG00016295 mRNA downstream 354666 14935995 ~ 14944083 (+) True AMCG00016295
TU15538 other upstream 137981 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 939586 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 944790 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 948876 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1794723 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 1903026 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 1903026 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 1903026 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2535464 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 9498688 24080017 ~ 24110182 (+) False G14057

Expression Profile