RNA id: TU15762


Basic Information

Item Value
RNA id TU15762
length 591
lncRNA type read_through
GC content 0.38
exon number 2
gene id G12743
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15547050 ~ 15605487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggtgttcctaataatcctttaggtgagtgtatatatatatatatatatatatattttttttttttttaaataagcaaatgcTATGATCAAATGCTTTCAAGAGAGAAAgttcacaatacaaatacattatctgTAAATCTGTCacaaaaagaagaggaaaaataagcaaatttgGCATTGGTGCATTTGAACTACTTGTTCCAAATATGGAAAGTACTATCCCTATCTAAAAGTATATATTACTGAACTAATATAATCTATTGTTGAGGTTGAGATCTATTGCATATTAGCTATGCACACGTCTGACAGGTGCAGGCACAGAAATGAAAAGCTGCCTTTACAAAAATCACTGTACATGCTATTGTCACCATGGATACCATGAAAATGAACTGCTCTTCCCTCATATTCATCAGAGAAAGACCACATAATTTTCAGGAATTAGACCAGTTTTGCCTTCATATGTTGCTTGGAGCCAACCAGGTTCCACTGAAGCATAAACTGTGggtggaaaagaaaatataaccaaaaaatacagaaactgaaatgttaCCCGGTGAGGTATGTATGTTAATTTTCTGTTGCACCGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15723 lncRNA downstream 129532 15417023 ~ 15417518 (-) True G12707
TU15717 lncRNA downstream 353409 15193202 ~ 15193641 (-) True G12702
TU15634 lncRNA downstream 758632 14786993 ~ 14788418 (-) False AMCG00016293
TU15550 lncRNA downstream 1083227 14463617 ~ 14463823 (-) True G12595
TU15548 lncRNA downstream 1110519 14431718 ~ 14436531 (-) False G12594
TU15855 lncRNA upstream 219424 15824911 ~ 15825237 (-) True G12807
TU15857 lncRNA upstream 223279 15828766 ~ 15829026 (-) True G12809
TU15858 lncRNA upstream 223868 15829355 ~ 15829567 (-) True G12810
TU15859 lncRNA upstream 229335 15834822 ~ 15835082 (-) True G12811
TU15860 lncRNA upstream 229707 15835194 ~ 15836468 (-) True G12812
AMCG00016304 mRNA downstream 188716 15142256 ~ 15358334 (-) True AMCG00016304
AMCG00016302 mRNA downstream 404908 15140361 ~ 15142142 (-) True AMCG00016302
AMCG00016303 mRNA downstream 407191 15137408 ~ 15139859 (-) True AMCG00016303
AMCG00016294 mRNA downstream 695937 14849850 ~ 14851113 (-) True AMCG00016294
AMCG00016293 mRNA downstream 756005 14785198 ~ 14791045 (-) True AMCG00016293
AMCG00016309 mRNA upstream 15569 15621056 ~ 15624452 (-) True AMCG00016309
AMCG00016316 mRNA upstream 129609 15735096 ~ 15740346 (-) True AMCG00016316
AMCG00016317 mRNA upstream 136954 15742441 ~ 15758023 (-) True AMCG00016317
AMCG00016315 mRNA upstream 199373 15804860 ~ 15824266 (-) True AMCG00016315
AMCG00016319 mRNA upstream 235772 15841259 ~ 15849112 (-) True AMCG00016319
TU15638 other downstream 755081 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 1987866 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 2676490 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 1253054 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 1253054 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 1253054 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 3485752 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 4529710 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile