RNA id: TU15857


Basic Information

Item Value
RNA id TU15857
length 261
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G12809
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15828766 ~ 15829026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAGAGAGCCGTCAGCATCTGTGCGTCAGATATGTTCTTTTCATTTGTGAGGTTCCGTACCACTCCCTCCATCATCTCCAGGGGCACGAACTGAACCACACTGGCCAACGCATTGGATGGAACGATGCTCCCTTCTggtgggaaaagaaaaaacgctGCTGTTGGTAACATAAAACCTTCAGCTCAGCTTGATAGTGTGACGCAACGcaatctgtatatataaaagtgaGTAATTTCCCAAACCAAATCAGTAGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15855 lncRNA downstream 3529 15824911 ~ 15825237 (-) True G12807
TU15762 lncRNA downstream 223279 15547050 ~ 15605487 (-) True G12743
TU15723 lncRNA downstream 411248 15417023 ~ 15417518 (-) True G12707
TU15717 lncRNA downstream 635125 15193202 ~ 15193641 (-) True G12702
TU15634 lncRNA downstream 1040348 14786993 ~ 14788418 (-) False AMCG00016293
TU15858 lncRNA upstream 329 15829355 ~ 15829567 (-) True G12810
TU15859 lncRNA upstream 5796 15834822 ~ 15835082 (-) True G12811
TU15860 lncRNA upstream 6168 15835194 ~ 15836468 (-) True G12812
TU15862 lncRNA upstream 8809 15837835 ~ 15840792 (-) True G12814
TU15890 lncRNA upstream 394459 16223485 ~ 16223728 (-) True G12838
AMCG00016315 mRNA downstream 4500 15804860 ~ 15824266 (-) True AMCG00016315
AMCG00016317 mRNA downstream 70743 15742441 ~ 15758023 (-) True AMCG00016317
AMCG00016316 mRNA downstream 88420 15735096 ~ 15740346 (-) True AMCG00016316
AMCG00016309 mRNA downstream 204314 15621056 ~ 15624452 (-) True AMCG00016309
AMCG00016308 mRNA downstream 231966 15577433 ~ 15596800 (-) True AMCG00016308
AMCG00016319 mRNA upstream 12233 15841259 ~ 15849112 (-) True AMCG00016319
AMCG00016321 mRNA upstream 61234 15890260 ~ 15902820 (-) True AMCG00016321
AMCG00016320 mRNA upstream 92071 15921097 ~ 16030468 (-) True AMCG00016320
AMCG00016318 mRNA upstream 228083 16057109 ~ 16061718 (-) True AMCG00016318
AMCG00016328 mRNA upstream 579329 16408355 ~ 16409278 (-) True AMCG00016328
TU15638 other downstream 1036797 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 2269582 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 2958206 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 1029515 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 1029515 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 1029515 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 3262213 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 4306171 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile