RNA id: TU15864


Basic Information

Item Value
RNA id TU15864
length 3351
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G12816
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15919583 ~ 15924725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaacacaaaatattcgtttttatttttttttccactaaaGACTACACAGGGTCGCTGCTGTAGCTCTAGAAGGTatctacatttgcattttatttacagctttTATGTTTTGATCTTATTTACATGGCCAAAGAATACAGTGTTAGAAACACAAGgtgttgagaaaaaaaaatctcaaaatgaATCCAAAACTTTagaaaaagtacaattttaCAACACAACAGATCTCAGTGTGGTTTTCATAATGCAGTTTTCTTCCCCCACGTAAagtcttagttttttttaaactgcatttttaatgcTTACAAagtacagaataataaaaaaacaacctaaaacataaaaaactcaaaacaaaagtGTGATTTTACTTGAAAGGTATTTATAAAGATTGTGACACacttacatattttttctaagGATTTTTCTCCCTCTCAGGTGTCATGTAGTGTAAGTGGTAACAAGTCAGGCATCAGTGCAAAATTAGATTTCAATGTTACACCTGAAAAAGATACAGATCACCGCCACTTGTTCTCATGGCCAATGTAAGCTCATCACAAGTCATAGTTTTCTAAGTATTTAACACATTGACCACATATTTCATTTCCAAAGAGAAAATTCCAGTGTCTTGCATGTAAACCCAGGAAACATTGAAAAACACCCGGCTAACTAAATGTCCAGGAAGGTAAGCCAATAATTTGGGACCCAAGGTTGGTGTGCATGCAAATCTTTTAGCTTTCAGGGGTGAGCTCGTATATCTTCGGGTTTAATGCGCGTTGCTCCACTTTGGGACAGAGTCGACCATTTCAAGCAATAACTCAAGCGCTGAGGAGGTTGACCCCCAAAGCAGCACTGAAGGAATGCGCTGCGCAATAACAAAATTTCACACACTGTTCGTCGTCTCCAGCAGTCAATGTGTTAATAGCGTTGTTCTAAATGAAAGTATATGTTTTAGTAACGTGCtgtcttttaaaagcattcacAAGTCTTTTTTTAGAGGGCATAGTTATGCCACGTGATTCacagttgaaaataaaaaaatgcttaaaagaGCAAATTACTAAAAAGCACTTTGCATTAATACTGGCCTAAAAAgggtaaaaatgtaattctttacACTTAATCTTccacaaataaaccatttaaaaacaactttccAAACATGTTTATACTTTATTTCACATGTGCTGGAAACACCCTTAAATATTGTTCAAGTACAACAGTTAGCAATAAAAGGgacaatatttcacatttctgaattcacatttgttatactgtatgtatatatagaaaaaggaaaataaaactccagatttaaaatgaaaaacctttTGAGTAAAATACCTTTCAATGCTTTTATACAGATTTCAAAATTCCCCACTTGACATGGATTCACTGGATTCTGTTTTCACAATAGACTTCTATAGTGAccaaggaaaatataaataaattgtaattgacTGAAACACCAACCTATTAATTTCTATTATCACCTCCCCGCCCTCCCATCCCCCTCCATACAAGCTTTCACAAGTCCTTCTGGTCACAACCTCCCACCCCTGTAATGTTGAAAGAATTTGGTAAACTCTAGTGATAAACATAACTCATGTAAACTGAAATATAGTCAATTGTAAAAATACACTGGAATAACAACCCAGAGCCCTTGAGAGCTTGGACTTGGACTGAGACTGCTGATTTAGCCAGACTGaaactttgaaaaacattacaagaaATTACGATAAAATACAGAAGTTGACAAGTTCAGCTGAAACATGGACATAAGGAAATGGACAGCACAGGTGACCACATTGAGTCAGGTTATCTaggtttcttttcttccccccatAAGTGGCAAATGGGTTTTCAAGTATAAAAAGAAGCGAGGAAACGAGAACGCCTCTTCTTCTTGTCAGGAGCGTGAAAAAGCCTGGAATGAAACACGCTTGTGGATCACACTTTGCTTCACACAGGAGGCAGAGCAAACCAGTGAATATAATGCGTTTACACCACTCCATTTTGATTCCTTTTTAACAGACACACCAACAGGGacggaaaataaaataaaaaacaagtcaCTTAGATCGCGAACTTCATCCTCTTGCAATCCCTCTTCAATGGATTGtcgaaaataaaaatgaaaaacaattggGCACTCTTCAGTAAATACAGTGCGACTGTatagaacagtttttttttgtctgttttttgttttcaataaaaaaataagtaaaacacagTCAAAAAAAGTGGCCACATAAGCAGCTGTCTTTGGCAAGTAGTCCTCAATGCTGTCCATGTTTGTCACTCAGCCTCCCTGTGTTCATGTCACCTCCGGCCCATTTCACTCTGTCTCATGAAATGAATGTTGTTAACACTGTCTGACAGCTCGGGATACTGGTCCACTGAAATGACAAAGTAGCCGTCGTAGCCTTGCACCCTACCGGCGCTCAGCAACTGctgcttctctccctctgtccacGAGCGCGTGCCATCCTCGCCCTCCTGCAGTCTCTGCCGCTCTCGCCCCCAGGCCTGCGCCACCGCACGCTGCCTGGCCAGCTCCAGCACGCGCACCTTCTCCTCGTCTATGCTCGTCCCGTAGCGGGTGTTCAAGCACAGCGCCCCGTACTGGAGCTGGATGTCTGTGATTCGCCTAGTCCTGCCGTTCAGCACGGTGTTCATCTGCGACACCGTCACATTGACCCCCGTCTCCAGGGTCCTGCGGCCCACCGTCATGCCGATGAGCGCCAGGTCGTTCTCCACCGGCCCCAGCTTGACGAAGTAGTGGGTGTCGGTGCCGGCGATGGTGAAGTGCAGGTCCTGCAGGTAGAAGGCGTCGTTGAGCACCGCCGCCGTGCGCCGCCCGTCCTCGTTGGCCAGGCTGATGATGTCGGTGGTGACGCGCCCGTCTCTGATGGCGAACTTCACCCCTTTGCCGAAGATTGAGCCCCCCGAGGCGAAGCGGATTTGCCCCTCCGACTGCTGGCACCCTGCGCTGCTGGCACCATAGATCTGCCCGAAGCGCTCCAGCTTGACGAAGGCCTTCAACTGCCTCTGCACTTCACACTGCACTCCCAGCACCGACTGCGAAGAGACAGGAGAAGAGCGTTACAAGACAGTGTGATTGGGTGAAGGCTCACAGAGATGACTGACAACTTGGAAAGGGAAAAGGTCCAGCATGAGGCTGACAAATGATTGACAACATTGGACTCTGGTAAACACatgcacaaagaaaaaacagctgtgAAGTGTTTCTCTGTTTCCTAAAGGGACCCCAACACTATAGGCATGTTTCATCCTCTGGGGTTGAAAATCATCATCAGCTCTAATATTCCTTGACAAGAGATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15803 lncRNA upstream 175936 15741186 ~ 15743647 (+) True G12763
TU15728 lncRNA upstream 455271 15464077 ~ 15464312 (+) True G12712
TU15607 lncRNA upstream 1136048 14780312 ~ 14783535 (+) False AMCG00016288
TU15565 lncRNA upstream 1303874 14576587 ~ 14615709 (+) False G12605
TU15566 lncRNA upstream 1338254 14576587 ~ 14581329 (+) True G12605
TU15957 lncRNA downstream 608379 16533104 ~ 16533381 (+) True G12886
TU15967 lncRNA downstream 683993 16608718 ~ 16608985 (+) True G12896
TU15972 lncRNA downstream 698958 16623683 ~ 16623967 (+) True G12901
TU15977 lncRNA downstream 747407 16672132 ~ 16672496 (+) True G12906
TU15978 lncRNA downstream 750168 16674893 ~ 16675189 (+) True G12907
AMCG00016314 mRNA upstream 82622 15824997 ~ 15836961 (+) True AMCG00016314
AMCG00016313 mRNA upstream 193738 15716894 ~ 15725845 (+) True AMCG00016313
AMCG00016312 mRNA upstream 222324 15683434 ~ 15697259 (+) True AMCG00016312
AMCG00016311 mRNA upstream 257323 15660319 ~ 15662260 (+) True AMCG00016311
AMCG00016306 mRNA upstream 262188 15650151 ~ 15657395 (+) True AMCG00016306
AMCG00016324 mRNA downstream 469246 16393971 ~ 16403344 (+) True AMCG00016324
AMCG00016322 mRNA downstream 505365 16430090 ~ 16435049 (+) True AMCG00016322
AMCG00016323 mRNA downstream 521903 16446628 ~ 16461315 (+) True AMCG00016323
AMCG00016330 mRNA downstream 540726 16465451 ~ 16483942 (+) True AMCG00016330
AMCG00016329 mRNA downstream 559793 16484518 ~ 16485080 (+) False AMCG00016329
TU15538 other upstream 1480977 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 2282582 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 2287786 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 2291872 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 3137719 12778224 ~ 12781864 (+) False AMCG00016221
TU15937 other downstream 559630 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 559630 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 559630 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 1192068 17116793 ~ 17121932 (+) True G13012
TU17415 other downstream 8155292 24080017 ~ 24110182 (+) False G14057

Expression Profile