RNA id: TU15965


Basic Information

Item Value
RNA id TU15965
length 543
lncRNA type intronic
GC content 0.48
exon number 1
gene id G12894
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16595678 ~ 16596220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGTCTATAATGTACGTGTTCGATAACATTCCACTGCTGAGCCACACCAACGGGGGAGATCATAGCAGTCCAGAAACGTTACGCTCTGGAGGTTATTCTGTGCTCTTCCGGAATAGAGGAGTCTATGCTTTGCTGATTAAGGAGGGTTGACTCTCGTTTTTGACTCCTCATGGAGGGGAGCTGACCCTTAACCAAAATATAGAGCCCGTCAGTCAGCCGTGTGAAGGCACAAGATCCGACCCAATCGTAGGGTAAGTGGGAATAAGCTTTATTACCACAAACCCAATACCAATCTTTCACCATGAATGTACCCCAGAGTGGAAAGGATATGTTACAGGATGGTTTTCTATCTTCACAGGTTAGTTCACTATGCTTATGAAGGCTAGGCGTTTTATGAATCAGAGAGATGTTACGGGGTGAAgggggtgtgtgcgtgtgtttacaCATAGCTGGGGGTAAGTTACCAAGACCATTATTGATACCCCAAGCATCTGCTCTGGACCAGCAGAGTGAGACAAAAGGTTTACCAGGGGATGATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15930 lncRNA downstream 124719 16470611 ~ 16470959 (-) False AMCG00016327
TU15929 lncRNA downstream 127406 16467973 ~ 16468272 (-) True G12868
TU15928 lncRNA downstream 127859 16467617 ~ 16467819 (-) True G12867
TU15890 lncRNA downstream 371950 16223485 ~ 16223728 (-) True G12838
TU15862 lncRNA downstream 754886 15837835 ~ 15840792 (-) True G12814
TU15968 lncRNA upstream 12498 16608718 ~ 16608944 (-) True G12897
TU15973 lncRNA upstream 27463 16623683 ~ 16623906 (-) True G12902
TU15986 lncRNA upstream 153499 16749719 ~ 16749919 (-) True G12915
TU15992 lncRNA upstream 195203 16791423 ~ 16791669 (-) True G12921
TU16051 lncRNA upstream 270099 16866319 ~ 16868327 (-) False AMCG00016345
AMCG00016333 mRNA downstream 9012 16576609 ~ 16586666 (-) True AMCG00016333
AMCG00016331 mRNA downstream 87271 16504216 ~ 16508407 (-) True AMCG00016331
AMCG00016332 mRNA downstream 108798 16486461 ~ 16486880 (-) True AMCG00016332
AMCG00016327 mRNA downstream 120508 16470697 ~ 16475170 (-) True AMCG00016327
AMCG00016325 mRNA downstream 150190 16435492 ~ 16445488 (-) True AMCG00016325
AMCG00016336 mRNA upstream 161195 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016344 mRNA upstream 214816 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016343 mRNA upstream 264960 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016345 mRNA upstream 270098 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016342 mRNA upstream 280052 16876272 ~ 16880591 (-) True AMCG00016342
TU15638 other downstream 1803709 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3036494 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3725118 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 262321 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 262321 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 262321 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 2495019 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3538977 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile