RNA id: TU15973


Basic Information

Item Value
RNA id TU15973
length 224
lncRNA type intronic
GC content 0.36
exon number 1
gene id G12902
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16623683 ~ 16623906 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tataatgatatatattctgcttagctaactctctaagataatatagtaatgactttgtgattgtaaccagatctttgttttttgtgtataaaagcctctgacttttaaaatgaaggcagagcgactttgggatcttcttgattcactgttcctctccacgctgcgtgtattaaaggcattgcaactaacgctccaacctgattgaagatgattgttcttccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15968 lncRNA downstream 14739 16608718 ~ 16608944 (-) True G12897
TU15965 lncRNA downstream 27463 16595678 ~ 16596220 (-) True G12894
TU15930 lncRNA downstream 152724 16470611 ~ 16470959 (-) False AMCG00016327
TU15929 lncRNA downstream 155411 16467973 ~ 16468272 (-) True G12868
TU15928 lncRNA downstream 155864 16467617 ~ 16467819 (-) True G12867
TU15986 lncRNA upstream 125813 16749719 ~ 16749919 (-) True G12915
TU15992 lncRNA upstream 167517 16791423 ~ 16791669 (-) True G12921
TU16051 lncRNA upstream 242413 16866319 ~ 16868327 (-) False AMCG00016345
TU16072 lncRNA upstream 294660 16918566 ~ 16924672 (-) True G12978
TU16151 lncRNA upstream 618038 17241944 ~ 17246330 (-) True G13045
AMCG00016333 mRNA downstream 37017 16576609 ~ 16586666 (-) True AMCG00016333
AMCG00016331 mRNA downstream 115276 16504216 ~ 16508407 (-) True AMCG00016331
AMCG00016332 mRNA downstream 136803 16486461 ~ 16486880 (-) True AMCG00016332
AMCG00016327 mRNA downstream 148513 16470697 ~ 16475170 (-) True AMCG00016327
AMCG00016325 mRNA downstream 178195 16435492 ~ 16445488 (-) True AMCG00016325
AMCG00016336 mRNA upstream 133509 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016344 mRNA upstream 187130 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016343 mRNA upstream 237274 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016345 mRNA upstream 242412 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016342 mRNA upstream 252366 16876272 ~ 16880591 (-) True AMCG00016342
TU15638 other downstream 1831714 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3064499 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3753123 12862099 ~ 12870560 (-) False AMCG00016226
TU16024 other upstream 234635 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 234635 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 234635 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 2467333 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3511291 20135197 ~ 20135547 (-) False AMCG00016453

Expression Profile