RNA id: TU16027


Basic Information

Item Value
RNA id TU16027
length 1842
RNA type TUCP
GC content 0.47
exon number 4
gene id G12945
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16858541 ~ 16861179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATTAGTAAACCCAGCATCTTTTAGTACAGATGTAACCAAAAAGTACAGAGACAATTTTGTGAAAAGATTTTATTTGTACCACAATTGCTTCAGGCTAGCAATAGGAATTAAAAATCTAACCTAGACAGGTTTTATACCCATTTTACAGCAAGCCAGACAGTCTTGAGGAATCTTTATTGTAAGAGATTAAGATGACTAAACCTAAAAGACCAGCTTTTACATGTTAGTTTAAAACCCAACTAAAACCAAAATGGTAAAATGCTACAGCACAGACAAGAAAAGTGCAGAAAGTAGCACTGGCACTACAGGGACATTCACAGAGGAGAGGCCCAGTTGTGGCGGGCCGCCATCATAGCACGTTTCAGCTGCTCATAGGTGACGAACATCACCACGTTCCAGGAGCCGAGACGCAGGAAAGAGGGCATGACCCTTTATAGAAGGCCATGGGCCCCTCCTTCGTCAACATGGCGAGTGCACAGTTCAAGGCACTGCTGTACTGGCCGAGCCCAGAGTTCATGTATCTTGTTTTCACTACATCCACAGGGGAAGCAATCACAGTGGTGCAGAAACCCGCACCAAAAGCAGATGTGAAGTGGCATGGAAGGGTATCTGGGGAAGAAGAGATGCTGAAATACAGAAACCGCCAACCTGGGCCACCACTCATTACAGGCAGAGCTTCAgggtatatacacacacataccagtCATTGGGGTGGATCGCAGGAGAGCATCTTTGATAAGGTCATAGGTCACTAGTTCAGTGCAGTTCACGATGGCATTGCGGGCGATATTTGGTGTAGTTCCTCCACAGGCCACGTATGCCCTCCTCcctggcgatggtcttgtaagCGTCGATGGTCCCTTGGTATCGCTTGTTGCCACTGGCCGTGCCAACCTGGGCCTGGAATCGCACCTTCACCACATCAGTGGGCTGGGCCATGGCCACAGCCATCGCACCAGTGGTGCAGCCAGCTAGCAGACGGCTGCCAATCCCAGCATCTAGTGGACGGAGAGAGGGCACTGGTCACACCTATGCCAGTCTGACAGACTACATCACCTTTTCAGAATTCCAATAGCAGTGGTAAGCCACACTTACTGCAAACAggtttaatgtaaatttcaataaatgcTCCACACTCAAGTGTATGGGGGCACTTTTAGCAAGAGCAATGCAATGGCTTgtcaaactgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNATTTGAAGATCAGGACTTTTCTTACAATCCATGAAGGAGTTTAACACACTGAAGTTTGTGATTAACCTGAGCCAAACTATAAAATACTGGCGATTAAGCATATTCAAAATTAAGTCAACCCCAAACCACCACCCCCTTTAAGAGTTCTGCAATGGATGGTCAATTGATGTGCAAGAACTCACGCTCGGCTCCTTTGGTGTAGAACTGTTTGACCGAATCATAGAGTCCGATACGGACAGAGGCAAAGCTCATTTGGCGCTGGAGCCCAGCCACCAGCCCGTTGTACAGACTCCTCGGCCCCTCAGTCTTCACCATGGTGTTGATGGTGCCAAACACACCACTGTATTTCACCAATTTGACATTGGGAGCAGCGgctttggatCTGGAGCCTGACTTTGGCCGTGTCGAGGGGGAATGTGAAGAGGTCTGCAATGCAGGCGGCAGTACCAGCGCCAATGAACTTCACTGCAGCCGTAGGGGGGACATCAGCGGGCCCGAATCCAACCATGATCACCAAGTTATTGGGGAACGTGCAGAACAGAACTGGCGACGTCGAGATGAAGTGAAAACAAGGCAGATGAACTCTAAAAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15992 lncRNA downstream 66872 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 108622 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 234635 16623683 ~ 16623906 (-) True G12902
TU15968 lncRNA downstream 249597 16608718 ~ 16608944 (-) True G12897
TU15965 lncRNA downstream 262321 16595678 ~ 16596220 (-) True G12894
TU16051 lncRNA upstream 5140 16866319 ~ 16868327 (-) False AMCG00016345
TU16072 lncRNA upstream 57387 16918566 ~ 16924672 (-) True G12978
TU16151 lncRNA upstream 380765 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA upstream 380765 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA upstream 380765 17241944 ~ 17246330 (-) False G13045
AMCG00016344 mRNA downstream 36171 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016336 mRNA downstream 83669 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016335 mRNA downstream 105551 16587491 ~ 16752990 (-) True AMCG00016335
AMCG00016333 mRNA downstream 271875 16576609 ~ 16586666 (-) True AMCG00016333
AMCG00016331 mRNA downstream 350134 16504216 ~ 16508407 (-) True AMCG00016331
AMCG00016343 mRNA upstream 1 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016345 mRNA upstream 5139 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016342 mRNA upstream 15093 16876272 ~ 16880591 (-) True AMCG00016342
AMCG00016348 mRNA upstream 68249 16929428 ~ 16938560 (-) True AMCG00016348
AMCG00016350 mRNA upstream 148552 17009731 ~ 17023094 (-) True AMCG00016350
TU15638 other downstream 2066572 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3299357 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 3987981 12862099 ~ 12870560 (-) False AMCG00016226
TU16556 other upstream 2230060 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3274018 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6593913 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6837970 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7449858 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile