RNA id: TU16072


Basic Information

Item Value
RNA id TU16072
length 5116
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G12978
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16918566 ~ 16924672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATCGTTAAGCTCGGACTCTGAAAAACAGCAGTGGCAAAGGCCTGTAGTTAAGAAAGTATGCGTGACATTGATTTGCAAAGGTTTTAttagaagcagaaaataaaaaaggcagacaATGTTCAAAACACAAGGAAAGTAATTGAATAGGcaggtgtttattttattttgttcaggcTTTGGGTATTAACATTGTCAAACAGAGGCTGAGGTACTTGTGATGTTTTAATGGCAAAACTAATTTCCAACGTCTTTGCAGTACTTCCAGTTAGCTTTTATCCCCCCCGACCTCTCCCtacaccccccaaccccaccccaccccaaagACATACCATACAGATAATCAGTAATGAATCAAATTGCACTGGCACAACAGTCAAGCCAAAGTGTGCTGTGATGTGTGTTTCGAACCCCTACAGCTACTCTAAATGTACACTACTTTATTACAGAAGCGTAGACAGCTCAGAATTCAGAACTCTCATACATCCTCCCCGTCGCACTcggaaagaaaagagaagccGCTCTCATCCAAATCGATTTGTTTTCCACAAGCTTCTTTGATTTCCTTTCTGTGGTCAAGGGTCATGTATTAGACAGTCATGCTTCAAACTAAGATGTGAATATTACAATCAACACCCTTTGACAAGAGGCCCAATTGAAatctttgaaatacatttattagattgtgttttcttgtgGCGCACAATAAAGGCTTTAATTGTagatacataatttatttcaaacataaggtgttttttttttttttttttttttaggttttttgttttacatgtacaAAAAAAGTAGCAAAAGTTTACACAATGATTTTTGTATAAGAAACCCAAGCCGCCAGACTATGTATATTGAAACCATACTGAAGAAGCATAAACGTGTTGAGAGCTTTCAAGCTAGTGAAGAGCCAAGAATCAACAGTACATTACAAGATCTGTCAAGCAGGATAAGCAGCTCTGTTTCGGTTAAAGATCAAGGCTAATAGAAGCTCATGTGAAGTAAGCTAGGCTCCTCCAAGCGTTTGATGTTGATGGACAACAAATatcttcttttaattattattaacaaggATACATCCAGTTGTATAGCAACAGGAAATCACGACAGCAATGAAACCGGTCACCCAGGCACAACTCCTCACCAGGATTTTAATTGTTACCAAAAAGCTATTTTGCCATAGTCACTAAATAGTTTCTTTATGGATGACAGAAAGACTGTGTGCCACAACAATTTTTAGCAGTGCAAATATGAGCCTCTGTGCATGGTATAGTATGTAGCAGTGATATCTTACCTTTCCTTAAAAAAGGATGGGAAAAGCAACCAGAGGTGACTAAAACAATCAAagacatttttcagaaaattgCACTGTACCGCGTGTGGGTTAAATTGTGCAGTGAGCAACAGGCAGGGCTAGAAGGATCGAGTGTATACCCTTGAGCTTTACAATAAGGGATTTGACAGatgcaaaataatgacaaaaataaaaagacaaattccTAAATGACATTTCTGTATGTAacataacaattacaataataataattaaaaaaacaaacaaaaaatgatctggtagaaataaatattacagaaaatggTTAATTAAATGAACATGTTAAATATCAACAACGAAAACAAAATCGCTTCGCTAAAGTGTCATATTACAAGGAGGTTAAATCAAATTTTACAAACCTAGCAAAAACCAAACCAGTGGAAGCCCAAATTATTAATgtctgagaaagaaagaaaaaaggcaaaatctGCATATTTTGTTCAGGTATCAAATATGATACTTCCCTTACTTTACAAAATGTAGTCTCGTGTTAAAAACCAATACACTCTCACATTTATGCAAGGGCGGTTTCACTTTCTTCATTATaacaaaggaaggaaaaataactaaatcaaCAGTTTATATCGGGATTAAATGACAATGGTAGGCAAACTGAAGACAACCTGTCCTCCTCGAGATACCAATCAGAAAAACATGCCAGGATGTAGAAGAGTTAAAAGGAGTTTATGAACGTCATAATCCTAAATGAAGCCATCACTGCATCAAAGTCTTTCCCTATAACATTCAATTTGATCTGAGGGATGGATGAATTGCTCCCCTTCCCATCTAGAAGTTAAAATTATCTGAAGGCTGAAAGGTTAGTGAAACGGCACAGACCTCCAGTAAAACTCCCCATTCTATCCGCAAGAGGCAATTATTGCCCAACACTGGCACACCTGCCCCTTTCAAAGCCAAATCAGACCATGTGAAACGATTATTTGAACTTCAAATACAGAACGTTGTACTCCGTTTGCTTTGTTGTGTAACTTAACGACAAACACTAAGTTCACGGTTACACCAATCTAAGGTAGTGAAAGACCAATTTGTATATGTGCtacttttcacacaaaatactaaaacaagTTCCATTTTTCATATGTGCATTATTTCAcatataaagcaaaataaaacacaattaaaaaaaaaaaaagtctataaGCCTAATTTTAACATCTGTCAGAACAATAGAGCCATTTTGATAACCTTTCAAGATTTAACAAAACGCACACCATTCCAATCCATTCTTGTGCTTGTGAAGCTAACGGGTCTTTTAATGAGACAGCCAACAATGATGAATTTATTCTTTAAtcgtgttgttttcttttctctttcttgcatgtagtgttttgtttagttttttttctgatgtggAAAGTTACAAGCTGATATTCACACTGCAGCTGATGGGAATGAGATAAGCAGTGGCATagaatgagaaagagagagatagagagttagagaaagagagagagttagagaAAGAATAAGATACATGGTATTAACATGAGCACCCCCCCTCGCTGACGGGCTGTTCTGGGGGCTTTTCCAGCTTTATGATACTGTCTTCTCTGCTCTTGTCCTGTGTGCTTTCCATGCCAGGCAAGGCTGCGGCAACACGCCGGAAAAGCTGAGGGGGACAGGAGAGAGCGCTCTGGAGTTATATTGCAATTTACAGAAGCAAGTCAAAATGAAGCAGAACTTTCTCACATATTATGTTATTGAGCTCCAAATATGTTAGGTTGGAAATTCAGCACTTTGACTTGTGATCTGCAGTGGTTTATCTGAACTGCTAGTGGCTGCACTGAAGTCAAGTGAcattcatttgtattgaaaaGACTTTAATGCATATACGGGGAAGGACTTCTTACCGTCATGAGATACTTAATTTATATCCTATAGGTTCAATTTCAAAGTGCCTCAAAACCAAAACCTTGAAACTTCTCTACTTCTTTAAAACTTAGTAATTACTGTTCGTTGAGAGCTTAACTTACACCACCGCAATGTTGAACTCTAAGGagccaaaaaaactaaaaacacaccaaaaaggACTTTTAAACCACACCAAGCCACACTAgcctttttgtttcattgccATTCAGACTTTTTCTAAAACACCCAGCCTCTTAATTAATTCAATAGATTGAGCTTCATTCAGaaattcagagaaaaaaaagacagctttTACCAAGCAGCACAATTCCTTCCTGAGGTGTAAGAGACAGTCCTTAAAATGGACCCTTTAAACATGGGGGTGGCTTGCTTTATTTGAAAAGATGTCGTAAAACTGGGGATATGAATAATTTGTCAAAATGCTCCTCTGAGAAGAGATTTTTTTAACTGCTGGTCAACAGATTTCACAGGTCTCATAACAGTCCATCTTGGATCAGCCTTATCCAAACAACTCTGCTTTGCTCCAAAATTTAAAATGGGCATTTTCAGAACAAGCTTCTTCATGTTAAAggttaattaatataaaaatctcTCAAGGGCACATTTTAAGAACAATTCTCTATGACATTAACATGAATGTCAAGGGTGAAAATTTAACACAGTCATGGCAAAGATCGGTAGTGCTTGAAAGGGATATGCTCCCAATGTTCTCGAAAGCCTGTTTGAACAGAATGATCAATACAAATCTACTTATGCATGCTTGCAATGTGGTCATATGGTCAGTAAAGTGTAAAGGACTGCAGGCTGCCATCCTTCACCAGATCTCAGATAATGAATTTAGGAAGCACACTATTTTAAAATTCCAAATATTGTTTAACTACATCAGAAAGGAATTAAGCCTgaataataaacttgttttaaGATCAAGAAGGTGCCAGGAATTCTACATAccaaaaaactaacaataacaattgaaaagcactttttttttggtgggggaaTAGGGCCTTTTACAGTGGAAATGTAAAACCATACAAGCACAGTGAAAGGTAAGCATAAGCTTTTCGACATGACTGTATTATGGTTAAGTTATTGGATTCACTTATTGCCACATTCTCTACAAACCATTACAATGGTGGGTCGAGTGATTCAAGAATGTCTCGCAGCCATTGGTGAAAATTTCAATGGCATAATTCCCTGACCATTTCATAAGCTGTTCTTCCTAATACAATAACTTTCCAATCTCTAATAGATGGATCTGCAGAGCAGCCAAATGACAGAATTTTAAAGGTCCCTGTTGTCAATGTGATGCATCTGTAAGGCTACTggttgacatttttaaatccaataTACTAACCATCAGTGGACCAAAAAGGTAAATTAAGTTAATAGTCATGCAGacttaaagcattacaaaataaattaatataatggtTTGTGCAGATGTGGTAAAacccaaacaattaaaaacaaaactaaaatcaagaCTACTTCTGTGCAGGCtgtcacacatttttctttaaaatactgatGAGAAGCACTGGCAGAGAATGGCCCTAGGACAGGACTGTCAAACTGTGATCCTCTGCCCCACACTACAACAGCATGCTCTACCTGCTTGACATTGTAGCCTGTCTTTGCACTTGTTTCAATAAAGAGCACATTCAGCTCTTTGGCTCTCTGCTCTCCCTCTTCAGTGGTTATCTGTCTGTACAGGAGGtaagacacagggacacaaaacaacaaaacaaaaaacaaaacgtaaacaaaaacaaaactaaacgaCAACTCACACTGTGTCATCTGTTCGCTGCTTGCTACAAATCCAAAACAGTGAATACTAATAGCCTGGTAATACGGACGGTGCTAACACACTAATGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16051 lncRNA downstream 50239 16866319 ~ 16868327 (-) False AMCG00016345
TU15992 lncRNA downstream 126897 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 168647 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 294660 16623683 ~ 16623906 (-) True G12902
TU15968 lncRNA downstream 309622 16608718 ~ 16608944 (-) True G12897
TU16151 lncRNA upstream 317272 17241944 ~ 17246330 (-) True G13045
TU16154 lncRNA upstream 317272 17241944 ~ 17246330 (-) False G13045
TU16156 lncRNA upstream 317272 17241944 ~ 17246330 (-) False G13045
TU16168 lncRNA upstream 338929 17263601 ~ 17266135 (-) False AMCG00016360
TU16181 lncRNA upstream 359731 17284403 ~ 17286829 (-) True G13065
AMCG00016342 mRNA downstream 37975 16876272 ~ 16880591 (-) True AMCG00016342
AMCG00016345 mRNA downstream 48564 16866318 ~ 16870002 (-) True AMCG00016345
AMCG00016343 mRNA downstream 54174 16861180 ~ 16864392 (-) True AMCG00016343
AMCG00016344 mRNA downstream 96196 16811036 ~ 16822370 (-) True AMCG00016344
AMCG00016336 mRNA downstream 143694 16757415 ~ 16774872 (-) True AMCG00016336
AMCG00016348 mRNA upstream 4756 16929428 ~ 16938560 (-) True AMCG00016348
AMCG00016350 mRNA upstream 85059 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016351 mRNA upstream 115633 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016353 mRNA upstream 179302 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016352 mRNA upstream 198034 17122706 ~ 17123239 (-) True AMCG00016352
TU16024 other downstream 57387 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 57387 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 57387 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2126597 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3359382 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 2166567 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 3210525 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6530420 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6774477 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7386365 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile