RNA id: TU16114


Basic Information

Item Value
RNA id TU16114
length 2268
RNA type TUCP
GC content 0.55
exon number 2
gene id G13012
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17116793 ~ 17121932 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCACACATCAGGGAGCCGGTCCTGCAAATGCAAGCTGGGGAGCTGCACTTCATCGGGGGCTGTAGTCCTGAAAGCCATTTCCAAGTCTCGACTTGGCTCAGCTAGAAAAGTTTCTTTCCCATCCACACAGCCCACTGATCCGCCGCTATCATGGTCGGCGTCCACTCTGGAGGCTGCGGGCGGCGGTCTCTGGTGCACAGGGGTGGGCGcactgtctctcacacagcCGGCTTGCACAGCCGCACACTTCAGGTCGTCCGCGTCCGAGCTGGACCGGTGCTGCTTTCGGTGCCCGTCTCCAAACAGCTTGCGGATCTGTGTCACACTTGGCCAGTTTGTCATTTCGACATGAGCGCCCTCGGCTGTGTCCCGCTGCGACCTGCCCGCCGCGACCCCACTAACAAACACCTCATCctcggcggcggcggcggcggcagtCCTTAGCAAAGTAGCGGCAGCGGCAGCGGGTACAGAAACTTTCTTACCTGCGGGCACCGACTCACCCCCGGAGTCCTGGCACCTCCACGCAGGCGGCTCTAGCAAGTCCTCCTCGGGCTCCGGCAAACGTCCCCTCTCGTCCCTGGGCAGCTTGTGGGAAGGTAAGCCCTCAGCCCTGCCTTGGCTCCGGGCCGGGGCGCAGTCTCTGGCGGGGAGGGTGCTGAATCTCTCGGAGAGCTGGCGGATGGACGGcgagatggagagggagggcAGAGCGGCGCTCCTCTTCAGCTGCGCGGCGGCCACATTGGCAGCTGAGATTTTGGAGACTCTCCTGGCCGCGGCCGGCTCTGCAGCCGAGGGGGGATGGGCGCCGCCCGGGACGGCGGCGCGGCGGGGCTGGGGGTGCTGCGCGGCCGGGCGGCTCTTATTTGCGCTCCAGCTCTCCAGTCTCTTGAAAGAAACGCTCCTGTACAGCTTTCGCCTCTGGTGCTCCTCCGCCATGCTGCCGGGCCTGTGCGCGGCGTCTAGCGCATGGACACTCGTAACCCAGCCAGCGCGGCTCTAGGCCCCCATTTGCGCTCCTGCGCGCACAAAACCGCAGGGAAGCGTCGCTCGCACGGGCTGCCGAGTTAAAGCGCAGTCCGAGGCGGGACGCGGGGCATCGTGAGCTGAGCGGGACCTGGCGTCGTGGCTGCCGGCTGGGCTGTGTTATCCGTGCACGGACAGAGGCTCAAACTTCGGCCAAAGTTTCCTCGCAGCTCCTTCAGCGGTGCAGCCCCTCCATCTGCTTCTCGAAAAGGTCCATGTCCCCCGTCGAAATGCCATTTCCAGCGCTGCCGGGCTCATCCCGTCCTCGCTCACAGGACAACTCAGGCCAACAGGATGCAACTGGATTTGTCACGTGAGGACGGAAGGCATTTCTCCCTTAACCGCAGTTCAGATGAGCCAGGGCACTATTTACTCAGTACCTAGACAAAAGCAagtcatttcacattttctcttttgCCCCTCAGTCCAGAGATCATCAAAACAAgtgctaagaaagaaataataatactaaagaCTAGTACTTAAATTATTCAGGGAATAGATGCCACCTATTGGCAGTGATCTCATAAGAGTACTCTATGTTTTCTTGCCCTTGGGCACTGAGACCTCTCATCAGATGTGCATGTTGCCTCTGACTGCCATTGTGAGTCACAATACAGAACATAAAGCAGAGactactataataatatatatatatacaaatatttgttataaGTCAACTAAGTCAACTTGGCACTTGTCAACATGTCACGTATATTTGGACTGGAAGATATCATAAAGTCTGTTGACctaggtgttttgttttccatattatAAAGGCGATAAAGTCATTATTGACAACTATCAACTGACTCTAAACTTCAGAGATAACTGTAAGGTAtaagtgtaaaatgtttaatgttgttCAGTTCTTTGGCTATGGCTTAAGCGGTTAAAACATATTAACCATGGACTCCTTCAAGATCGACAATGACACAAGCACCTAGAGACACTAATACAATCTGAGTGTAAAAGCATTCAGAACTGAACACAGAGGCACAAAGAGGTGAATCTTCAATGCTGTTGGAGCCGAATCACTGGGATCCTTAACGATATGTGACGATGCCATCCTTGGAGAGCTTAATAGCGTTCAAATGAGCACGATGAGTCAAGTGCCCTGCTTGTGTTTGTAAGCTCACATGGTTGTGTATGATCTATGTAATACCGTGAGAAAGGAGGCCCTCCAGCAATCCTGAGATGACTATAAACACTGATGTAAATGAGAGGTGCTCATCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16052 lncRNA upstream 239891 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 300462 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 441604 16674893 ~ 16675189 (+) True G12907
TU15977 lncRNA upstream 444297 16672132 ~ 16672496 (+) True G12906
TU15972 lncRNA upstream 492826 16623683 ~ 16623967 (+) True G12901
TU16121 lncRNA downstream 11382 17133314 ~ 17133530 (+) True G13019
TU16123 lncRNA downstream 21678 17143610 ~ 17146998 (+) True G13021
TU16296 lncRNA downstream 475418 17597350 ~ 17599581 (+) False AMCG00016379
TU16327 lncRNA downstream 536825 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 556195 17678127 ~ 17680909 (+) True G13174
AMCG00016349 mRNA upstream 109008 16968432 ~ 17007785 (+) True AMCG00016349
AMCG00016347 mRNA upstream 193855 16882704 ~ 16922938 (+) True AMCG00016347
AMCG00016341 mRNA upstream 254742 16851493 ~ 16862051 (+) True AMCG00016341
AMCG00016338 mRNA upstream 267601 16822917 ~ 16849192 (+) True AMCG00016338
AMCG00016339 mRNA upstream 309521 16794297 ~ 16807272 (+) True AMCG00016339
AMCG00016356 mRNA downstream 81074 17203006 ~ 17232829 (+) True AMCG00016356
AMCG00016355 mRNA downstream 111344 17233276 ~ 17240318 (+) True AMCG00016355
AMCG00016359 mRNA downstream 119947 17241879 ~ 17246793 (+) True AMCG00016359
AMCG00016358 mRNA downstream 125745 17247677 ~ 17250675 (+) True AMCG00016358
AMCG00016357 mRNA downstream 129618 17251550 ~ 17263292 (+) True AMCG00016357
TU15937 other upstream 630790 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 630790 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 631645 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 2678187 14437771 ~ 14438606 (+) True G12587
TU15237 other upstream 3479792 13635442 ~ 13637001 (+) True G12351
TU17415 other downstream 6958085 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7413086 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7886030 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 8011266 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 8028551 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile