RNA id: TU16123


Basic Information

Item Value
RNA id TU16123
length 3389
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G13021
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17143610 ~ 17146998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatagagagagagagagagagagagagagagaggtgtccAGTTGATGTAGATACATTTGCATTGTCAATATGCAGCTGCCTGTGATGTTCAGGGAAGTAAATGAAAAGGCTTCTGGCACAGCATGTTCATAATTTTCTTTGAGAGACATATTCACAAGATTCTTCATTATGTCCAGCTTTCTGGGATCCTGGGGTCAAGATCATATTGTCAATAAAGCAATGAAGGACTATGGTATCTGGAGTATGGCTTAGTGTGTCTTTAGGTAATATGGAATAATATGGAATATGACTATTATCATTTTCCAGCCCCCTAAACCTAATCTGGTGGTGTGTACCATTTTTTGAAGCATGGGCTGATAACAGATTTAGGAAAGCAGACTGGAAATCAAGGGGTCCTTCATTTCTCAGTGTTTATCGATAAACAGTTGTATTCCCCTGGGTGCAATATTCCTTTTCACCAGCAGTGTGACCTTGAACTGACTGCAGGAACATTTCTGAGAAACTCTGCGCAGCAGCATCACAGGACCTATGAGGTCGCAGTTACATCTGTCTGCGGTTTTATTCAAgttcacttttcattttattttctctatttttacAGGGGACTTTTTGAAATGGACTAATGGTGCACAACCCCAGTACCTTAATCTTCTAGGAACTACTTTGGCTTTCTGAAGGCTCCATAACTAACTATAAGTTACTCATAAATAAGCAAGTCTGTGCATGTACCTCCACAGTGTATACCTCTTTCTTACAGACAGTCCTCAAAGAGTCCAACCTGCAGTGTGTTTGAATCCATATTTTTAAGATGGAGTCTTATGCATCACAGATTTatctgtattactgtattaccTCGCCCCagattttcaatttgtttttgtttatttttggttgttgttgtttgtgacAGATGTCTAATGCTTTGATTGATATATATACTTTTCCTGTTCAATTTCCATAGCCACAGATCATCCATGCATGCTGTCATTAACCAAATGAGCAAAAACAGATGgtgcaataacaaaacaaatgatttttttacccacaagaaaaatgaaaaataaaatgcaaggaaACTCTGTCGATTAGCCCCTTTTtggttagaaaataataataatcacagcaGTACTCAAATAGTGTTTACTGTAGAAGCCCCCAATATGAATTTAAAGTGGTCTTCCTGTTCTCTTTTAGATATGTGCCAGAGAAATTACATTGCTGTTGTTTATATAACTGAatatcacagaaaaacaacaatcatgcagcaacaacaaaaactggaCAATTTGgagacatttataaaaaaaaaatcacaattatgTTAAAGAGCTGTTGGTTTGGAGAGTTCTGTAACTatacataataaacatatacattactATATTTAGTAAGGTCAGCATACATACAAATTGATGTATTTGATTGCAAGAGTTCACGTACAAGTAATAATCTGTGTACTGATTGTGAACAAAAAGGTTTTGTAGTTCTATGTACAAACATGGGTAGAAATAAAGCTCACCTATACTATTAACTAAACCATGAgtagcaaaacaaatgtagtaCAACAAATGAAACTATAAACTATTACCTGAACCTATAAATAGATGTGCTTATATCTGCATTCCTTGCTTATACCTGCGTTTATGTCaggtaataaataataaatgtgatcgtataattgcttttcttggaaatataatgaatgcattCCCCTTtgacaacaatacaaaaaaagcttTCACATGTCAGTATCAGGTTAATTATACTGATATCACATATTTCAAGTCTTTGTTAagtgttttcttcccccctccGCTGTAGATGTCCTGGATGTCTGAACAGCACAGTTGGTCTTATAGTGAGCAGTGTATATTGGGGCTGTGTGGTTTCATATTTGTAGCAGCTTGTAAACTGCACAAACTCAAATGAATCAGCCAATAGACATTGATTATGTTCTGTTCTACCTGAGCTCTGAACCAGGCCCCAGGCACGAGAACAGATGGTGTGCCAGTGAACTGCTCTCGATCTCCTGTCTGAGCCTGCTGATCCCTTTCCAATTTTCCACATACCTTGAAAACAGCACAATTTAGAAATAAGTTTGTCGTTCTCACTTAGTAACTCCCACCTCAAACCTCTTCACTGTACTAAGCTTTAGGTGGTTCACCGTACTAACAGTGGACTAATCTAATTCAGTAAGGAGTTGCACTTCATGGATTTTCAGTCTCTGGTACTGTAACATCACTTTGTACTCCACTTTGGGATGCCACTGCACCGATATTTCCCTTATTTCATCTCATGCATTAGTATCTTTTCAGCAGCAGATGCTGTCTGAGAGAAcaggacattttatttacacaatccTTTTCCTGCTTCACAGTTGAATCACAGTTGAGTTGAAGATGTCTTTTCACAGATTACATTCGGAGAGcagcttttccttttcctgGTGGTGAAATTCTTGCGAAAGCTCTGCCCTGCCAGGAAGTACAAAATGGGGTCCAGGCAGCTGTTGGCACTGGCAAGGGGCTTTGTGACCTTGTAAGCAATGCTGGCACCTTGCAGAGCGGTACAGCTGACATCCATGTACCTGAACATGTAGTAGAGTGTCCGAGTGAGGTGGAAgggcaggaagcagatcatgaaTGCGCCCAGGACAATGATGATCATCTTGATGGACTTCTGCTTGGACTTCAAAGAGGAGGCCCCCCCCGCACTGGGCTCCAACAGCTTCTTCACCATCAGGCAGTAGCAAACCACAACCACCATGAAAGGGATGCAGAACAGCACCACGGAGATGATGGAGCTGTACACCAGGAAGTCATTGAAGAGCTCAATGCTGGTGGTGTCGTAGCAAACCTTCTGGCCCGACGTTGTGGTGCGGGAGAAATACAAGATGGGCGACTGGAAGGACATGATGGTGACCCACACCCCCACCGAGATCAGTCGGGCCCTGAGCGTGCTCACCCACTGCAGTGACTGCATGGGATAACAGACGCCCAGGAAGCGGTGAATACTGATACAGGACAGGAAGAGGATGCTGGTGTAGAGGTTCGCGTAGAAGAGGAAGCGGATGATTTTACATAAGGGTTCGCTGAAGGGCCAGTCACTGGCATCAGCGTAGTAATACACCAGGAAGGGCAGCGTCAGGATGTACAGGGTGTCCGAGACAGTCAGGTTGAACATGTAAATTGTGCTCGGCTTCCAGTGCTTTGTGCGGAAGACAATGACATACATGGCCATGATGTTGAGCACCAGGCCGATGACGAAGACAAGTCCATAGCTGGTTGGCAGGAGAATGTACTTGAAGTTTTCATCTAATTGGCATTTGTATGGGCTGCTCTGGTTCAACGTGGTCTTGTTTGAGACAGCCATCATTCATCGTTAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16121 lncRNA upstream 10080 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 266708 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 327279 16815577 ~ 16816331 (+) True G12929
TU15978 lncRNA upstream 468421 16674893 ~ 16675189 (+) True G12907
TU15977 lncRNA upstream 471114 16672132 ~ 16672496 (+) True G12906
TU16296 lncRNA downstream 450352 17597350 ~ 17599581 (+) False AMCG00016379
TU16327 lncRNA downstream 511759 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA downstream 531129 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA downstream 531129 17678127 ~ 17680909 (+) False G13174
TU16441 lncRNA downstream 1112270 18259268 ~ 18259834 (+) False G13266
AMCG00016349 mRNA upstream 135825 16968432 ~ 17007785 (+) True AMCG00016349
AMCG00016347 mRNA upstream 220672 16882704 ~ 16922938 (+) True AMCG00016347
AMCG00016341 mRNA upstream 281559 16851493 ~ 16862051 (+) True AMCG00016341
AMCG00016338 mRNA upstream 294418 16822917 ~ 16849192 (+) True AMCG00016338
AMCG00016339 mRNA upstream 336338 16794297 ~ 16807272 (+) True AMCG00016339
AMCG00016356 mRNA downstream 56008 17203006 ~ 17232829 (+) True AMCG00016356
AMCG00016355 mRNA downstream 86278 17233276 ~ 17240318 (+) True AMCG00016355
AMCG00016359 mRNA downstream 94881 17241879 ~ 17246793 (+) True AMCG00016359
AMCG00016358 mRNA downstream 100679 17247677 ~ 17250675 (+) True AMCG00016358
AMCG00016357 mRNA downstream 104552 17251550 ~ 17263292 (+) True AMCG00016357
TU16114 other upstream 21678 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 657607 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 657607 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 658462 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 2705004 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6933019 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 7388020 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7860964 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7986200 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 8003485 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile