RNA id: TU16151


Basic Information

Item Value
RNA id TU16151
length 3572
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G13045
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17241944 ~ 17246330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAACAGCTGATGGACATTTGACTTTAATAGTGCAGCTTTCATATTGTTCCAGGCATTTTGCAACAAgatcaatatattaatttgacaagtttgtaCACTACAAAGCTATCACCCACCGATAAACAGATCCCCAATTCTACAATCTGTAATtctctccattaaaaaaaaaaaagaaagccaggGAATgtcttttactgttttattgaaattttatACAGTTTATCCCCCGAGGACTTCCATCTTCAGGTGTCGATGGAAACCTGCAAGAGAGAACGCAGTTAAATACATGACCATGTGAACtactttatttcaaatgcattcctgcatattttaatcacttcaatcatttcaaattaaagcttTGAAAACCCCTCTCAGACAAATGCCTCTATGTCTTCAATTAATAAACACTCTGCTCTGGGGCCTGAACTCAGAGACACAGAACGTGCCCCTGAACCAAAACCCCAGAGTCAGGCCGTGTCCTGTTCCGACTCGTCATCGTATCATCACTGAAgggaactatatatatattatatatatatatatatacacacacacacacacaaattggaCTTGCCAAATACAGGGTGAATTAATATTCTATTATACATACTATTGCATAAGATTAACCACAGACTCGACAATGCCCAATCCTTGCCTCTGTAGGAGTCATATGTGCAGAATGATGTGATTCTCACCCTTATGCGGTGGCGACTGGTCCGCCCTGTGGCATGACAGGGGCCTCTGGCTTGGCACCCTTCTGCTCAGACATGGGGGTGGTGGGGAGGACCTCATCCTTGGGCTCCACAATGCTGACGTGGTCAGGAAGAGGCTTCTTGGGGCCAATCTTGCCACTGGGATCCCAAGGCAGCATGATCTTGACCTTGATTCCCAGCACACCTACAGGAGAGATTAGACCAGATTAGATTCAGTAAAAGCAAGACAAACTGCAGTGGATGACTGGGACAGTTTAGACTAGATTCCACGGGGGAAATTAGCACACAGGATAATTTAGATTTGACCTGCAATGTAATTATAAATTAGCTTTGGTAAGACTTCTTATTTGATAAGGTACGACAAGTGCTCTGTAAAGAAAACCGAACATGCTAATCATAAAAGCACATGCCAGTTTTAAACTACAAAGCAAGCCAATTTCCATTAAAGGAATAACAACAGtttcagttacattttgcaAGCACATAGAAAAGCAGCAGACCCTTCTCAGACAAATGCCTCTATGTCTTCAATTGATAAACACTCTGCTCCGGGGCCTGAACTCAGAGACACAGAACGTGCCCCTGAACCAGAACCCCAGAGTCAGGCCGTGTCCTGTTCCGACTCGTCATCGTATCATCACTGAAGGGAGGAAGACTGATTctcaatgaaaagcaaaaagtaCCATGGACATAGATATAAATCTCCTATACGAACAGGTACAGTAAATCAAAGATAAGCTTTAATACAGCAACCAAAAACCAGATAGCCAAGCGATTACATACCCTGCCTGAGCAAGACGTGGCGGACAGCAGTGTCAACGTAGTAGTTGACGGGGTCTCCACTGTGGATCATCAGGCCATCGACAAACTTCATGGACTTGGCTCTCTGGCCTCGGAGCTTGCCGGACACCACCACCTCGCAGCCCTTGGCCCCGCTCTCCATGATGAACCGCAGGACACCATAGCAGGCTCTGGAACACAAGCAGGCATGCGTCTTCAAATCACACACCCTTACACGCGCTTTAGCAATTGCGCCATTTTCGGATCAATAGGAAAGCTTTACAACATGATTCCAGGATTGTactatgtacatttttacactGACAAACTATAATCACTCATACATCACTAGACAGATTTCCAACAAAGGGGATCAATTTACACACAAGGTACTTTGGAGCACACAAGACCCTTCTCAGACAAATGCCTCGATGTCTTCAATTGATGAGGACAGGCTGCTCTGGGGCCTGAACCCAGGGACACAGAACGTGCCCCCAAGCCAGGACCCCAGAGACGGGCCGTGTCCTCTGTCCGACTCGTCATCGTCTCATCACTGAAGGCAACAGCTCTATCAAACTCATCAGCCATCCTACACACTGATAAGGGGAGGAGTACACTCTACTATAATCTACCGCTCTGGACAGCAAGAGAAAATTGGTTCTTAACACTGCAAGGAAGTGTGCCTTGACCAGTGGGTGAGGCAAATACCCTGCTCCCTATAGAGCTCATTTTTGGGATTCTCACAAAGGTGTACATTAAAGGACAGTGACTCGGGCTGGACCCGAGGCTCACCTGCGCACAGCCAGGCCTCCCAGCAGCTTGTAACGCAGGGACTCCGCCTGGGCGATGGCACACAACCCTCTGGTGGCAACCTTCTCCGCATACAActagagagagagtgaatggCTTTAATGCATGATCACCAAGCAGGGAGCGAGCAGGATTTCAGACTATCTATATGTGGAGCTCACCTCAACGCTGTTCTCTGGGAAGCCAAACCTCTTCTGCACCACAGCAGTCAGTTCACGGATGCGGCGGCCTTTCTCACCAAGAACATTCTGAGTCCTGGAACAATCACCACAATCAGAAACCCAGTTGTCTGCCAGCATTCGAAAAGGCAAAGATCCTGTTAATGCTGACAGTTTACAAGGACATGACTGTAGACTGAATGAGGAATACATGCTACTGATTGGACGTCAAGGTACATTCAAATCATAGGAGCACGAGTTGTACAGGTtgaacaatacaattacacagaCAAAGGCATCCAATCATTGCAAATGTGAGCACTTCTGCAACAGGGTCATTTAACATGCAATAAAACGTTTACTTACACTACAAgaacagttaatttaaaaagtacaacaCTGCTTTTATTAGTTTCAAGTAGTTTGCCACACAGACATTTCTGATCTCACTCAGTCCTCTGAGGCCAAGGGAGTCTTTTTAACCCATACTGTACTGCCTAGTGCAAGTATTAGAAACTTAAATCAGAAGACACTCATTATACAAatcttaattttacttttacgcAGGTTTACTTAAGGTATGATGTAGTAGTTGTGTGTACAAATGTATGAAGGCTTGCAAGATCCTTCTCAGACAAATGCCTCGATGTCTTCAATTGATGAGGACAGGCTGCTCTGGGGCCTGAACCCAGGGACACAGAACGTGCCCCCAAGCCAGGACCCCAGAGACGGGCTGTGTCCTCTGTCCGACTCGTCATCGTCTCATCACTGAAGGAAGCCGCTCTAACCATCACAAACTCAACAGTCAATCACTAAATCTTGAGAAAGTAAAGGGGATTGACTATGGCATGCAGTTAGGATAACACTGCTTCACCGTGCATCTGGGATGCGTTTTCGTCTGGGGATTGGGATCTCCGGCGGGTCGGGTCTCACCGTGTGGCCAGGATGATGATCTCGGTTCTGGTGGGAGTGACTCGCACCTCCACCCCGGAGTAGCCATCCTCTGCAAGCTCCCGAGTCAGAAACTCATTCAGCTCGGCTTTGAAGATGCCATCTGCAACAAACTCTTCTTGGAGATCTGGGCCGTCATCTTGCTTCGAGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16072 lncRNA downstream 317272 16918566 ~ 16924672 (-) True G12978
TU16051 lncRNA downstream 373617 16866319 ~ 16868327 (-) False AMCG00016345
TU15992 lncRNA downstream 450275 16791423 ~ 16791669 (-) True G12921
TU15986 lncRNA downstream 492025 16749719 ~ 16749919 (-) True G12915
TU15973 lncRNA downstream 618038 16623683 ~ 16623906 (-) True G12902
TU16168 lncRNA upstream 17271 17263601 ~ 17266135 (-) False AMCG00016360
TU16181 lncRNA upstream 38073 17284403 ~ 17286829 (-) True G13065
TU16213 lncRNA upstream 128936 17375266 ~ 17377539 (-) True G13091
TU16261 lncRNA upstream 247525 17493855 ~ 17494346 (-) True G13126
TU16264 lncRNA upstream 249593 17495923 ~ 17496347 (-) True G13129
AMCG00016354 mRNA downstream 94959 17145993 ~ 17146985 (-) True AMCG00016354
AMCG00016352 mRNA downstream 118705 17122706 ~ 17123239 (-) True AMCG00016352
AMCG00016353 mRNA downstream 124209 17103974 ~ 17117735 (-) True AMCG00016353
AMCG00016351 mRNA downstream 170497 17040305 ~ 17071447 (-) True AMCG00016351
AMCG00016350 mRNA downstream 218850 17009731 ~ 17023094 (-) True AMCG00016350
AMCG00016360 mRNA upstream 17290 17263620 ~ 17266747 (-) True AMCG00016360
AMCG00016361 mRNA upstream 46758 17293088 ~ 17294875 (-) True AMCG00016361
AMCG00016368 mRNA upstream 134101 17380431 ~ 17413600 (-) True AMCG00016368
AMCG00016367 mRNA upstream 181174 17427504 ~ 17460486 (-) True AMCG00016367
AMCG00016369 mRNA upstream 220353 17466683 ~ 17472931 (-) True AMCG00016369
TU16024 other downstream 380765 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 380765 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 380765 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 2449975 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 3682760 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1844909 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2888867 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 6208762 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 6452819 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 7064707 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU122712 True 4986 lncRNA 0.41 2 NC_047600.1 23270144 ~ 23275282 (-)