RNA id: TU16325


Basic Information

Item Value
RNA id TU16325
length 2737
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G13174
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17658757 ~ 17680909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAtgttttagacattttattttgaacaggacaatgaaaaaaatagacACCCCTTCCTGAAAACTCGATGATCGATTTCTCAAACACAAGCTTCATATATCATTTAATCGACCAGAGGAAATCAACTTCCAGCTATGAATCTATCCCCTATGAACACTGAGatgaaataaatcatttgaaGGGGAGAACATTTCTATAATGTTAAAGGATCATGAAGAGATACAAAATGCCCAGCACAGCTCCCAGTTCTTAAAGCAGACTTATTTCACAACATAGCAGGCATTTTTTTTGTGAGAAcacttcaaatgtattaatgtttttggtttaaataGACCATGGACACGCACATCTACACCTTGAGGCTAGTGATAATTCACACGTAACATGACACACAGAGATCACACACAGGGTGGGGGGCGTCTGGCATACACCTGACAGTGACAGGGCAgctgcattgaaaataaaaggtGAAAACTCAAAACTGAATTTACAGAGATTAGACTAGTCTGCAGTGCTACACTGAACTAAATGgtaatttgttgtattattttgacaGAAGGCCTCATAGGACAGCCACAGAGGTGTAAATCCACATGTAAAGTAAGAGCAAATCCTAAAACAACACTATGAATTGCATTCCCACAAGGTTGCATTCCCGTACATAAATTGCTTTGTGCATTCTATCGTGGCATACTTTAGATGGCACACTttgcattcaaatgtaatttcagaAAAGCTCCACAGATCCCTTTAATAAGCAATTTCATCTTCTCAAATGGTagttttcctgttttctctgTGTACAAAaggtaatgtatatataaagtgacTTTAATTTCTAACCAATTTTCAACAGTTATGCTTTTTTCAGTCGTGatacacaatattaaataatggTTGCTGCTACTTTATTAGAATGACAATGAGTGAATGACACCAGATctcctgaatatatatatatatatacacacacacacacacacacaattattaatttaaatggtatttaAGTTGTATAACGATGAGGACATTTATATTCCAGTAttggtttatttcaatattattattttcaaccaaaaacatcaaacagattacaataaattaaagataacaTGTTCAGTTTATCTCTGTGTGGAAAATAATGTTACAATTAGTATCCAAtggaattttttttaaactgataattgtatacataattttattatataactTGAATCTACATCACATGCACACCTGTTGTGTTCTGAAACAGAACAGTGTGGTTTGCATACATCAtgtgataataaaatatatatatatatataattatgcaaACAAACCTCACAAGTTATATTCATGAAGCAGTCTAATGTGCAGTGTGTCTTAATATTTACTGGATCTTAGTATTAATTTATGAACTTTCCGTTCCTGGTCAGTTATTGAAAAGGGTGTTATTGTGGTTTGTAATTTCATATTGGTGAATTTTACCAAAGCATGAAAGTGAAATACTGCCATGAACATGATGACTCACTGTTCAGTGATAAAACTCATTTCATCAATACTGTTGCCCTTTGTTGCTGCAGAGGAGAGATAattggatatttatttaatctgttcgTCATTTCACACAGCTGGCACAGAAAAGCCACCCTCCAGCAGAAAGCTATTGAAAACTGTCTTTGTGGGCTGCTGTGGAAAGCCATCGGGctggattttaaaaagcttttcctCCAATACAAACCCTCTAATGGTTTATTAAATGTCTCAGGGAAAAAATAGACtatgtagtaaaaaaaaaaaggacaggaACCaagtgcacagagagagagagagagagagagagagagagagacatattgATTATCCtttaattatttggttttaccTTTGGCACAGTAGGATAGTTTGATTTTATGTGCCAAGACAAAGTAAATGTGATGTAATGTGagtaattacaacaaaaaaaagcccACAAAAAACAGTGAGATAAAAGGAGTTGAAAGTATGCACCACCAATAAATGGGCAAATGGCTTCTTTCACTATAATTGAATCAATAAAAATCAAGACCTGAAGGCCACAACATGAAGATTAAAGTTGGATGCGTTCCTTACTAGAAAGTTTGCTATACAGttgaaattgaattaatttagttttgaatgAAGAACCACtattaaacagaaaagaaacaagaataaaCTTGCCCCTTAATTATAAACGTGTTCATCGAAAGGTCAAATGCAccttattgcattttaattattctattaCTAATTGAGCAGTGTAAAGACGACATCATAATGCACAGCATATACGGCTGACTGAGCAAACAGCAACCTCTTTAAGAAAGCCATCGCTTCGGCAATTATTGCGAAGTGAACATAGAATGCCCAACTCCGCCTGCAGAGATCTCATAAAGCTGAGGTATACATTACCACATTCACATCATTAACATGTTCATGGTTTCTATTCCCCAAAAAGGgttaattttaaatttgcagaaaacaattTGCAGCACTGATATTAAAATACCagtcacttttgtttttacttttttggtcCGTCAAAGCCCAGGGAGGACGGTGGCCCACGTGCACAGACCTCGTACCCCTCAGGAAGTGGCGCTCTGACGGCGGGGGGCGTCTGGCTTGCTCTGGAAGTTCTCCCAGTAGGACAGGTCCTCTTCTGTCAAGGGAACGGCTCCCGACACAAGGTCACTGAAGCTCAGCATGGTGAACTCTGGTGCAATGGGATTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16296 lncRNA upstream 78546 17597350 ~ 17599581 (+) False AMCG00016379
TU16123 lncRNA upstream 531129 17143610 ~ 17146998 (+) True G13021
TU16121 lncRNA upstream 544597 17133314 ~ 17133530 (+) True G13019
TU16052 lncRNA upstream 801225 16876345 ~ 16876902 (+) True G12966
TU16002 lncRNA upstream 861796 16815577 ~ 16816331 (+) True G12929
TU16441 lncRNA downstream 578359 18259268 ~ 18259834 (+) False G13266
TU16438 lncRNA downstream 578632 18259541 ~ 18262343 (+) True G13266
TU16442 lncRNA downstream 584293 18265202 ~ 18265406 (+) True G13267
TU16445 lncRNA downstream 589124 18270033 ~ 18274439 (+) True G13270
TU16448 lncRNA downstream 607131 18288040 ~ 18288261 (+) True G13273
AMCG00016377 mRNA upstream 39707 17624138 ~ 17638420 (+) True AMCG00016377
AMCG00016380 mRNA upstream 66967 17603723 ~ 17611160 (+) True AMCG00016380
AMCG00016379 mRNA upstream 78548 17562418 ~ 17599579 (+) True AMCG00016379
AMCG00016378 mRNA upstream 118328 17538087 ~ 17559799 (+) True AMCG00016378
AMCG00016372 mRNA upstream 145763 17528571 ~ 17532364 (+) True AMCG00016372
AMCG00016386 mRNA downstream 5947 17686856 ~ 17691260 (+) True AMCG00016386
AMCG00016387 mRNA downstream 194535 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016388 mRNA downstream 401013 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016394 mRNA downstream 417102 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016393 mRNA downstream 476798 18157707 ~ 18165129 (+) True AMCG00016393
TU16114 other upstream 556195 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1192124 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1192124 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1192979 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3239521 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6399108 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6854109 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7327053 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7452289 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7469574 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile