RNA id: TU16441


Basic Information

Item Value
RNA id TU16441
length 236
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G13266
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18259268 ~ 18262343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAGGCGCCTTGGGATGCGTGAGCCACGGCCTCCAGATCTTCTGATCAGCTCTTCGTTGGTAAGCATTTCGTGCTCACTGTAGTGGGTGGCGGTCCACGATTTCTGCACAGCATTGATGGCTTTCACAAAATCTGGATTGTGTTTGTAGGGTTGCTGAAACAGCCTTTAGgaggaagaaaataagaaaatgaatcaaactgaaattatattgtgtaatagatgaatacattttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16327 lncRNA upstream 578359 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA upstream 578359 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA upstream 578359 17678127 ~ 17680909 (+) False G13174
TU16296 lncRNA upstream 659687 17597350 ~ 17599581 (+) False AMCG00016379
TU16123 lncRNA upstream 1112270 17143610 ~ 17146998 (+) True G13021
TU16442 lncRNA downstream 5368 18265202 ~ 18265406 (+) True G13267
TU16445 lncRNA downstream 10199 18270033 ~ 18274439 (+) True G13270
TU16448 lncRNA downstream 28206 18288040 ~ 18288261 (+) True G13273
TU16449 lncRNA downstream 50694 18310528 ~ 18315356 (+) True G13274
TU16472 lncRNA downstream 159183 18419017 ~ 18473689 (+) False AMCG00016407
AMCG00016393 mRNA upstream 94139 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016394 mRNA upstream 158465 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016388 mRNA upstream 174165 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016387 mRNA upstream 371532 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016386 mRNA upstream 568008 17686856 ~ 17691260 (+) True AMCG00016386
AMCG00016397 mRNA downstream 104904 18364738 ~ 18370387 (+) True AMCG00016397
AMCG00016407 mRNA downstream 159183 18419017 ~ 18429096 (+) True AMCG00016407
AMCG00016411 mRNA downstream 368594 18628428 ~ 18635806 (+) True AMCG00016411
AMCG00016412 mRNA downstream 403168 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016405 mRNA downstream 444033 18703867 ~ 18762647 (+) True AMCG00016405
TU16114 other upstream 1137336 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1773265 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1773265 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1774120 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3820662 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5820183 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6275184 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6748128 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 6873364 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 6890649 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile