RNA id: TU16449



Basic Information


Item Value
RNA id TU16449
length 394
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G13274
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18310528 ~ 18315356 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTAGCCTAGCACATGTGATGCAGCCTCGTAAATAAATATGGTGACTGCAAACAACAAGCCAGAGCTTGAGGACCCTCCCGTATCCTTCAGGTCTCCTGTTTGGGAAAATTACTACAGTGGCAATGGGCAAAGACAAGTGGATAAGTGCCGGCATTGTTATACTGAAATCGGGGAGCCGACTCTGAGAACAAAGTCTTCTTCAATCAATTAGATGACAGCTACACCATTTGAAGGGAAGAACCATTTCTTAGGGGACcttaaggaaatatatattatttggagACAGTTTGTAGAGAAGTGTAAGATGTAGGTAATGCTCCATTCCACGGggtgcaattaaatatattcaatacatATGACATGTTGTTTATTGGGTGACTAGTTTGAGTAGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16448 lncRNA upstream 22267 18288040 ~ 18288261 (+) True G13273
TU16445 lncRNA upstream 36089 18270033 ~ 18274439 (+) True G13270
TU16442 lncRNA upstream 45122 18265202 ~ 18265406 (+) True G13267
TU16438 lncRNA upstream 48185 18259541 ~ 18262343 (+) True G13266
TU16441 lncRNA upstream 50694 18259268 ~ 18259834 (+) False G13266
TU16472 lncRNA downstream 103661 18419017 ~ 18473689 (+) False AMCG00016407
TU16508 lncRNA downstream 468092 18783448 ~ 18826531 (+) True G13323
TU16530 lncRNA downstream 775885 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA downstream 775885 19091241 ~ 19103960 (+) False G13342
TU16553 lncRNA downstream 846226 19161582 ~ 19161812 (+) True G13364
AMCG00016393 mRNA upstream 145399 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016394 mRNA upstream 209725 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016388 mRNA upstream 225425 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016387 mRNA upstream 422792 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016386 mRNA upstream 619268 17686856 ~ 17691260 (+) True AMCG00016386
AMCG00016397 mRNA downstream 49382 18364738 ~ 18370387 (+) True AMCG00016397
AMCG00016407 mRNA downstream 103661 18419017 ~ 18429096 (+) True AMCG00016407
AMCG00016411 mRNA downstream 313072 18628428 ~ 18635806 (+) True AMCG00016411
AMCG00016412 mRNA downstream 347646 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016405 mRNA downstream 388511 18703867 ~ 18762647 (+) True AMCG00016405
TU16114 other upstream 1188596 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1824525 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1824525 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1825380 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3871922 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5764661 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6219662 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6692606 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 6817842 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 6835127 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile