RNA id: TU16555


Basic Information

Item Value
RNA id TU16555
length 409
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G13366
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19088224 ~ 19088632 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTAATTTCTTCCTGGCTCTCCAAGGTGTCTGATAATTTCCTAGACATGCCCACATCAGGAAGCTCCTCATGAATAAAAGTGTTGCCACAGGGATGGGGAGAACCCAGAGGAGTGGGTAGGATAGGGGCTAATTCCTTGGCCCCGTATGCAATGTCCTTGCTTGGTCTGTCTTCCAGCCAGGCGGGCTGGGAGCTTCTGCAGGCAGAGCACAGAGAAGTAATACACTGAGGCAGAATGCCAGCAACCCCTCCTTTCTCCTGTCATTTCAGCTTCAATGCTGCAACTTTCCcttattaatttgatttcctCCCTCCTGTGGCAGGTTAGCTCTGTGCGAATGCAGATGACTGCACAACACATTCAATATGGCGACACACCTACAAGTGTTTTCCAGTTGTGAAAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16528 lncRNA downstream 10401 19077368 ~ 19077823 (-) True G13341
TU16525 lncRNA downstream 29551 19058405 ~ 19058673 (-) True G13339
TU16520 lncRNA downstream 186248 18826194 ~ 18901976 (-) True G13334
TU16425 lncRNA downstream 922454 18162787 ~ 18165770 (-) True G13254
TU16302 lncRNA downstream 1547879 17538034 ~ 17540345 (-) False AMCG00016376
TU16588 lncRNA upstream 76954 19165586 ~ 19253414 (-) True G13392
TU16615 lncRNA upstream 168006 19256638 ~ 19256919 (-) True G13413
TU16616 lncRNA upstream 169691 19258323 ~ 19258557 (-) True G13414
TU16865 lncRNA upstream 914517 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 1227110 20315742 ~ 20316579 (-) True G13680
AMCG00016404 mRNA downstream 48720 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016403 mRNA downstream 73475 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016402 mRNA downstream 186643 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016401 mRNA downstream 652196 18420753 ~ 18436028 (-) True AMCG00016401
AMCG00016400 mRNA downstream 688466 18380464 ~ 18399758 (-) True AMCG00016400
AMCG00016409 mRNA upstream 20510 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016410 mRNA upstream 66702 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016414 mRNA upstream 96306 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016419 mRNA upstream 188666 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016420 mRNA upstream 193070 19281702 ~ 19316677 (-) True AMCG00016420
TU16024 other downstream 2227045 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2227045 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2227045 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4296255 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 5529040 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 2607 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 1046565 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4366460 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4610517 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5222405 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile