RNA id: TU16556


Basic Information

Item Value
RNA id TU16556
length 1153
RNA type TUCP
GC content 0.47
exon number 2
gene id G13367
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19091239 ~ 19105381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGACGGACGGCTCTGCTGCCACGTAATCCCGGagagcagagagacaggaggCGGGCGGACACAGCCAAACTGTCAGCCATCGCGCAGGATTACGAGCAACAACCGCAAGAAAGAGACCAGCCGAGCCTGTTCCTCCCCATTGAACCAGTCGCCCGGCTCTGCCGCTGTGTAGAAACAGAGGCCCGACGTTTCCATCCTTGTGGTCACAGCCCTACTCACTCATCGCCCCCCACATTGCTGTGTGTTGCAAAGAGCCCCTTCCGTTGCctccagagagggagagagccaTGAGGCAGCTCAAAGGAAAGCCCAAGAAAGAGACGTCGAAGGACAAGAAGGAGAGGAAACAGGCCATGCAGGAGGCACGGCAGCAGATCGCCACGGTGGTGCTTCCCACACTGGCAGTGGTGGTGCTGCTCATCGTGGTGTTCGTCTACGTGGCGACCCGGCCTGGTGCCATCGAGTAATGCAGGACGCCCTCACACAGACTCATTGCTCCCCACTTATGGGTTTCTCCCCCTCCACACCTCTATCCTTCCCTATTCCCATTTTTTCCAGCATTACTttgtttcacaatgttttttagAAACCAATTGGTTCTACAGGATAATGAATTCTACACTTTTCCTACTGCCTTGcgtctttttaaaattatgctTCCTATTCTGTTCCTCTTGGGAAAAGAATCAGGAAATAAACGGTTTGCCACAGTGCATCATTCTTTTCATATGTGCCTTCGATGAATGACATTGTCTGGGGGGGTAGGGTGGCCATTGTGTTCTGTGCAAAGAAGTTATCAAGTGTTATGTGCttattttctaaagaaaatTTGATTCATCTTGCCTCTATGATGCTGTCTTATTGAATGCTAAAGGTGTTAATTCCATGCTTACCAAAGGATCCTTTCACCTGGATGTGGCTGCCACTGGATGTAAGAGTGTGAGCTGCAGTGTTTCTGTGAATGAAACTCATCATTGATCAGACACTACATTGTCACTGTATTGTGTGTAATGTAGTTCTACACATTTTGTACTATTAAGTTATTGAAACTGACTGTCATACAATATGGCATGTGTGCAGATTTACAAATGTGCCTTACACatcaaaaaatgtatcatttcagttaataaaGACGACTGAAAAACCAGACA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16555 lncRNA downstream 2607 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 13416 19077368 ~ 19077823 (-) True G13341
TU16525 lncRNA downstream 32566 19058405 ~ 19058673 (-) True G13339
TU16520 lncRNA downstream 189263 18826194 ~ 18901976 (-) True G13334
TU16425 lncRNA downstream 925469 18162787 ~ 18165770 (-) True G13254
TU16588 lncRNA upstream 60205 19165586 ~ 19253414 (-) True G13392
TU16615 lncRNA upstream 151257 19256638 ~ 19256919 (-) True G13413
TU16616 lncRNA upstream 152942 19258323 ~ 19258557 (-) True G13414
TU16865 lncRNA upstream 897768 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 1210361 20315742 ~ 20316579 (-) True G13680
AMCG00016404 mRNA downstream 51735 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016403 mRNA downstream 76490 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016402 mRNA downstream 189658 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016401 mRNA downstream 655211 18420753 ~ 18436028 (-) True AMCG00016401
AMCG00016400 mRNA downstream 691481 18380464 ~ 18399758 (-) True AMCG00016400
AMCG00016409 mRNA upstream 3761 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016410 mRNA upstream 49953 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016414 mRNA upstream 79557 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016419 mRNA upstream 171917 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016420 mRNA upstream 176321 19281702 ~ 19316677 (-) True AMCG00016420
TU16024 other downstream 2230060 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2230060 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2230060 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4299270 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 5532055 13554585 ~ 13559184 (-) False AMCG00016246
TU16905 other upstream 1029816 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4349711 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4593768 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5205656 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 5205656 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile