RNA id: TU16588


Basic Information

Item Value
RNA id TU16588
length 1622
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G13392
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19165586 ~ 19253414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagaaaattattCATCACGGTTTTCATTACAGGGCTACAGCGCCCTCTAGCCAGCAGGCAATTGTATTGGTTTTGAATAAAATCAGCTGAAATTCTCTCGCTAACAGATGCACACACGTCGATTGATGATTGTCACCATCTCCAATCAGTCCTAATAGCTGGCAAACTCCACATTGCTGGAGGAAGCAGCCAGGACACATTGGGCAGACAGGttagtgagaaagagagagacagagagagagggagaatatACAAATAGACCAAGTGATGAGTTTATTATAGACAAGTCCTTTGTAACCAGTACATTTTGATTCTCTTTTTggccttttacattttgtggtgCTATTCCTATGACAGCAGGTCTACTGCAGTAGGCCGGGCTGAATCACTTCAAAAGACAGCACAATAAATCACAACAAAATACACCAAtgggtaatttaattaattcctccaatttaatttgttaaaagtttaaattaattaagccAACCAGGCTGAACAGACAGTGGCTCTGGAGACCAAGGAATGAAATGTCAGTAGTCATGTTTTCTCTGCACTTGACAATTTGGTACATATCCACAGAAACTAATTGCAGAGGAAAAGACAATGTGGTAAAagtttctgatttttttaaataaaaacaaaatgagataATTCATAGGAAATGCACTGCACCTGCACATTTACACATACAGAGTTGAACAGCATAGCGAATTTTCCATTATCCCTGTATCTGTGTGACAAAGTGTGCACCACGATGCGTTCAGTTTTTCAATTCTCCCATCTGACTCCACTTTTAGACAAATTCTGTTAATACACatccatatttatatacagcagTTACTTCCAAGTTAATTGCAccataaaattacaaaaacatttttgctaCAAGACACATGCCAAACGACCGATCACGCATTCCGAgggttttaaataatacaatcttaCATCAACGCATTCGAAATGAGCCCGTCCGCTTGTTCACCAGTTTTGTCCGTGTTAACATATGTCATACATATGGCAAAGCAGAAGAACATGTTGTAAACTTAATTTCAGAGATAAATCAcagcttttgatttattttagtaatagtTTCTCTTTAACCACCACTTTATTGTTGCTGCATTGTGACCAGGACTCCCCatcaaaccaacaacaaaatgatACACGACCATGTTCCTGTTTAATAAAACTCACTACAGTGACTTAATACCCCAAGACTAAAATCTCTGGATTGATTTAGGCGACTGGATTACAAAATCAGATTCGCTAGACCCACAGACCCTTGACTAGCCTAAAAATCCCATGAGATTTATATCTACTTTATTAAGCCTATGGATATAGCAAATACAGTAAACCATCTCTGATGAAGAATGTTAGAGGAGAGACCATGAATTTGTCCACAAACTACTTACACTTCTTTTTATCAGCTCCTGCCATAATTTCCACAATTGCCATACACATTACATATACGGCAGGCTAATTAAAAAAGTAGAAATTGAAGGTTTCTAACATCATGCATGTTTGACAGcaattgaatattaaataatggGGACAAAtccataaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16555 lncRNA downstream 76954 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 87763 19077368 ~ 19077823 (-) True G13341
TU16525 lncRNA downstream 106913 19058405 ~ 19058673 (-) True G13339
TU16520 lncRNA downstream 263610 18826194 ~ 18901976 (-) True G13334
TU16425 lncRNA downstream 999816 18162787 ~ 18165770 (-) True G13254
TU16615 lncRNA upstream 3224 19256638 ~ 19256919 (-) True G13413
TU16616 lncRNA upstream 4909 19258323 ~ 19258557 (-) True G13414
TU16865 lncRNA upstream 749735 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 1062328 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 1214832 20468246 ~ 20513404 (-) True G13762
AMCG00016410 mRNA downstream 3858 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016409 mRNA downstream 22068 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016404 mRNA downstream 126082 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016403 mRNA downstream 150837 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016402 mRNA downstream 264005 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016419 mRNA upstream 23884 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016420 mRNA upstream 28288 19281702 ~ 19316677 (-) True AMCG00016420
AMCG00016418 mRNA upstream 112670 19366084 ~ 19375596 (-) True AMCG00016418
AMCG00016424 mRNA upstream 124586 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016423 mRNA upstream 174041 19427455 ~ 19437740 (-) True AMCG00016423
TU16556 other downstream 60205 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2304407 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2304407 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2304407 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4373617 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 881783 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4201678 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4445735 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5057623 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 5057623 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile