RNA id: TU16616


Basic Information

Item Value
RNA id TU16616
length 235
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G13414
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19258323 ~ 19258557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgcgggacaggtacaggatggtaacaacaactgcccgagttacaccaggaaagcacaatccctccatcagtgctctgACTGTCCGCAAtcggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtccttaccagacatcaccggcaacaacgtcgcctatgggcacaaacccaccttcactggacgtgatttcctgcaaatcctttacaataaagatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16615 lncRNA downstream 1404 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 4909 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 169691 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 180500 19077368 ~ 19077823 (-) True G13341
TU16525 lncRNA downstream 199650 19058405 ~ 19058673 (-) True G13339
TU16865 lncRNA upstream 744592 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 1057185 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 1209689 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 1228324 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 1336772 20595329 ~ 20598765 (-) True G13789
AMCG00016414 mRNA downstream 52729 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016410 mRNA downstream 96595 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016409 mRNA downstream 114805 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016404 mRNA downstream 218819 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016403 mRNA downstream 243574 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016419 mRNA upstream 18741 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016420 mRNA upstream 23145 19281702 ~ 19316677 (-) True AMCG00016420
AMCG00016418 mRNA upstream 107527 19366084 ~ 19375596 (-) True AMCG00016418
AMCG00016424 mRNA upstream 119443 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016423 mRNA upstream 168898 19427455 ~ 19437740 (-) True AMCG00016423
TU16556 other downstream 152942 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2397144 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2397144 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2397144 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4466354 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 876640 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4196535 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4440592 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5052480 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 5052480 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile