RNA id: TU16699


Basic Information

Item Value
RNA id TU16699
length 4243
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G13490
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19458049 ~ 19462968 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAAACAGAGGAAGACAAACAAGAGACACAACTTCATTCAATGTATgaaatttattttgataaaaattCAACTGCCTTTGTTCTCTCTCAGAAGACATCTCCTACAGGTTTGCACTCTTCTCTCTGAACATATTCCGTACATGTTATAATTAAACTCTCCGACACAGACTCCCTTTACAGTATCTACAGAGGTAtgtacaaatgaaaacacaatgacattgaaagaaaccaaaaaaagaaaaaaaatacaacttacTTATGCAAATATCATATGACTATTCCACCGTTTGTTTATTGTGGCTACtttgttttcagataaaatTGGAAATGACCTTCTGAAGGTTAAACCTTCATTTTATGAGTGTCTGACATATTACTATTCCCATGGTATATTTGTACCCCCACTAAAATCTTTCATGACCAGCtgtcttaaagaaaaaaaaaaaaaaaaatcttccacctcattaatgtaataaaaacaatctaaaaataTTAGTTTGTGACAAGTTACTAAATCTGAACTTTTTCAggtaaataaaagcatttaaaaaattcaGTAATAATTCATATTCACTGCAAGCACCTCAAATGTTTGCAATGGGTACATTTACGTTCCTGCCTgttaaatttattttgattatttgtatattgaaaaacattgaattatCATATGTACAGGACAGCCACTAGCAACAactacatatacagtacaggcCTGAATTATTGATTTACAAAATGGGGTCCAAAGTTGGCACATGGAGTTTATTTTTGGTGACATAAAATAGTCAGTGTCAGGtttagtaacaaaacaaataaataacttataataatataacccAAACACGTTTAATGAAAGTAAATATCCACAAGGAAATAACTTAAAACCAGGAGAAGATGCACATGATTTAGAATATCCATGATCTATAAAAGACTCAGAATGTATGCAACAGGGTTGGAGATTAACTAATTGTTGAATTTGAGAAGCATATAAACTATGGAAACTAAACTGTCAAGCTAAGAAAGGAAAgtaaaagaacagaaaaatatacattaaccTGAATATGTTATGTGCAACACAAAATCTTTTAAACCACAAAAGACAACTCAGCAGTAACGTACAGAAGAGTCTGAGTATACAGTAGCAACACATATTTTAGTGGAACATGGGCATTGAGTCTTTATTTACAGAGGTGCCAAATGGGTTTTATGCCTCAAGTTgacttgcattttattcttcaaggaaaatcaaatgtatGACAAACTGAACATAATttgacaataaaaatgaaataataataaacaaagactACATATTCTCTACACTAGAAAAACTATTAGCCCTATTATTAGTCTTTATTTTGTCATAATCTTTAATTACTTTTAGTTGCAATTACTATGTAGTTAAACTGAATACATTACCTATTGAGAATGAACTAATGTTGCCCTTTGAGtatattcaattataatttaCTGCTGCCAATGTATAGtagatatttctgaatataaaatgcattactcAATACTTCTGAAAGAAGAAGCATAAAGGTTCCAGCACCCctgtaaatataaacatgtacaCTGTaggtatattttttatacaatatGTCTTTCTCTAAAGGCAACTCAGATATGGTAAGGCAAATCAATAATATACACATTCTGCCAGGGTTCAATTGACCATAAATGCCTTAAAGGGCCATTAGCCCTTATTTAAAACACCCTCAGAATTTATTTACACACTCACGCATTTACAAAAAGTTAAATTCAAGGGAATAGCTTCCACACATAACTCAGATACACAAACTGCTACATTCTTTTGTCTCCAAATCCACAGTCTTACAATagacttaattttaaaatattgaccTTGTAAAACATTGTGCAATGGATAAACATACACAAGTAACATGTACTAGTATGTAgttaactgtattttaaagggTTATTTAATGTGATTGTATTCTTTGTAGTGAtttcacagaattaaaaaaatgcatttaacattgaaacaaaacaaaaacaaaacaaaaaaacatgtttattcagcatttttttctttgttaaatgGTAATGATTGTTGAATAACTTTACCTGAGACCTAACAGTCTGAAGAGGGTCCACACATATTTAGTTAATATCTAAAATGCACTTACACATACTTGTATAGTTTTGTAGGCAGTTCAATTACTCTTTAAAGAAGATGGACTACTCTTTCCAATccaaaagtttaataaaatctatactttaaaaagtttttttttttttttttttttgctttttgtctgCAATGGAAGAACAGAAGGATTCCTTCTCTTCCCAAATTCAGCctatatggttttaatttgattatcaCAATGAAATGTCTTTCCATACCACCTGTCTATGGTAGGCAAACTCAAATCATGAAGGCGGAAACTCGGTCTTGGACATTACTGTGTGTTTAGTATtttatgcaattaacacatGGAACAGCACTATGTGTGAGTATGAGAGACACAACCATAAGCAGTATTTTGTACATGTGACACCAAAGACAAACTAGCTATTTGTGCTACCGGAAGCTGTGCATatggtttattaaaatgcattgaagtCAGATGTCACTGTAAGTAATAAGTCCCACACCCATATCAGTGTCAGCTTTTCTCCTCTATGCTCAGCTTGGAAactttagaaaataatacagattcCCAGGATATAAATACAGTGAGTCATATAAACATAGGAATAACCATGTAGCAAAACAGTAATTTAAGATGAAGGAACAAGCAGAACGCAGCACTGACTTTGATTGTCTGTAATTGTCCTTGGTTTCACTGTAAAAGAAGGCTTCAACAataagaattttaaaatataggtTTTTGCTGAAATTAAGATCCCAATCAGATCTGCAtagatctttaaatattttctaaaaggcAAATCTTTGGGGAGAAAAGCACTTAGCAATGTGGACAGATTGACCTGTTTTCTGGAcgcaatgttttttgttgaatGTGTGAAAGATTTGTATCTACATTTCTTAAAGACCCTCTTGATCAATCTCATAAAACTACATCTCTACAATTTGCTTTTTTATGACATCAGAGACCTATGTGTTTAAACAGGGTGAATTTGAGAGTCTTCCATCACCAGCactaaacacatatttaaaaaataaaggactCAAACATCTGCTTGCAAACACTGTTTccaatatgaaaaaaaagaaaaacatgaaacctGCAACCACTATTGTTTTGGCTTTTCAAAGCTGAACaaagtaacactttatatttacACTGTTGGAATTACCATTCATTACTGAGACGACAGGTTATTACCATAAAGGGTAACAGTACGCGTTTTAATACTAGCAGAATTTACAGTTGATAACactgtataaacaaatatattagaaaaacaatcttTTCCACAGTTGATGAACTATATTGAAAGACACCACAAGCtgttcagaaataaaacaatattctttCCTTTGCTGTTCTCCTAGGCTCAGCATGGGTTGTCATGTCCCAGGCAATCATTCAAACCTTTCCAAAGTCTTTAAGGTAATTCCCTTCAAACATAAGGTGttactgatttttattttttatttttatttgttttattagaaaAGATGTTGTCTCTCACAGTCTGTAACTAATTCCGGATCGTTTCTGAATCGCCACCTTCTTCGATGGCTTCCATTGATCCTGTGGTTTCCAAGCAACCGTTCATCCTCAGACTTTCGCCTGCCTGCTCCTGGAACTGCTCGTACTCCTCATCCAGGAAGTCAAGAGAGTTGTTGCTAGGCAAACCGCGGATGGTGAATTTATGGGAAACCTTGGTCCATTGGTTCCGATTGGCTGCGACTCTCTCATACAGCTCTCTAGATTTGGGGAAAAGTTCTTGGAGCAGCCTTGTAAATAGGCATGGCAATATGCTCCATGAAGCTGATCTGCAGCTCGGGAATGTATGCTTTCTCCCTGTCCATCATTTCACTGGGTCTGTTGCCCATGGCTTTCTCCTGCACAATGGGATGGGAAAACAAAGTTAgacaagcatttaaaatgagGCATGGGATGTTAAAGATTATGCATCATGACATCTACTGCATCTGCAGCATGATGCTTTGAGTTAGAAATACTGTGAACCATTGTAGATGTGCTCACCATTATCCATGTACCAACATATCACTGGATGATGTAAAActcatttcttttttcaagCATTTCAAAAGAATACATACCAGATCTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16666 lncRNA upstream 15935 19378000 ~ 19442114 (+) True G13458
TU16617 lncRNA upstream 195637 19262099 ~ 19262412 (+) True G13415
TU16613 lncRNA upstream 202117 19255725 ~ 19255932 (+) True G13411
TU16553 lncRNA upstream 296237 19161582 ~ 19161812 (+) True G13364
TU16530 lncRNA upstream 352521 19091241 ~ 19105528 (+) True G13342
TU16700 lncRNA downstream 513 19463481 ~ 19463953 (+) True G13491
TU16702 lncRNA downstream 5612 19468580 ~ 19468788 (+) True G13493
TU16703 lncRNA downstream 6667 19469635 ~ 19470098 (+) True G13494
TU16704 lncRNA downstream 7207 19470175 ~ 19470456 (+) True G13495
TU16705 lncRNA downstream 48945 19511913 ~ 19512166 (+) True G13496
AMCG00016422 mRNA upstream 13164 19438593 ~ 19444885 (+) True AMCG00016422
AMCG00016417 mRNA upstream 95579 19339826 ~ 19362470 (+) True AMCG00016417
AMCG00016421 mRNA upstream 132342 19324580 ~ 19325707 (+) True AMCG00016421
AMCG00016415 mRNA upstream 135768 19316828 ~ 19322281 (+) True AMCG00016415
AMCG00016416 mRNA upstream 206195 19239187 ~ 19251854 (+) True AMCG00016416
AMCG00016432 mRNA downstream 295359 19758327 ~ 19799814 (+) True AMCG00016432
AMCG00016430 mRNA downstream 348434 19811402 ~ 19814610 (+) True AMCG00016430
AMCG00016431 mRNA downstream 403310 19866278 ~ 19869018 (+) True AMCG00016431
AMCG00016429 mRNA downstream 412088 19875056 ~ 19879725 (+) True AMCG00016429
AMCG00016438 mRNA downstream 422790 19885758 ~ 19898268 (+) True AMCG00016438
TU16114 other upstream 2336117 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 2972046 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 2972046 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 2972901 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5019443 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4617049 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 5072050 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5544994 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5670230 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5687515 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile