RNA id: TU16705


Basic Information

Item Value
RNA id TU16705
length 254
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G13496
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19511913 ~ 19512166 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGCTTTCCCTCCGCTGGCAGCTCATGGGGGGGGTCGTCACACAGCAGTCTATTGGTTTCCACATCCAGGAGATAGATGAACACACCCTCCtgtagaaaagaaagagaaaagacttATTCTTCAGGGACACTTTGACTAAAAGGATGAAGTttaccacatcaaaccagaggagcttttccagatcagtagggacacacgcacccggggacacaaatggaaattggacttcaaggcattcaagacagaaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16704 lncRNA upstream 41457 19470175 ~ 19470456 (+) True G13495
TU16703 lncRNA upstream 41815 19469635 ~ 19470098 (+) True G13494
TU16702 lncRNA upstream 43125 19468580 ~ 19468788 (+) True G13493
TU16700 lncRNA upstream 47960 19463481 ~ 19463953 (+) True G13491
TU16699 lncRNA upstream 48945 19458049 ~ 19462968 (+) True G13490
TU16709 lncRNA downstream 52634 19564800 ~ 19565112 (+) True G13500
TU16797 lncRNA downstream 362934 19875100 ~ 19879716 (+) False AMCG00016429
TU16825 lncRNA downstream 502778 20014944 ~ 20018086 (+) True G13593
TU16833 lncRNA downstream 519327 20031493 ~ 20032916 (+) True G13599
TU16913 lncRNA downstream 707277 20219443 ~ 20256020 (+) True G13659
AMCG00016422 mRNA upstream 67028 19438593 ~ 19444885 (+) True AMCG00016422
AMCG00016417 mRNA upstream 149443 19339826 ~ 19362470 (+) True AMCG00016417
AMCG00016421 mRNA upstream 186206 19324580 ~ 19325707 (+) True AMCG00016421
AMCG00016415 mRNA upstream 189632 19316828 ~ 19322281 (+) True AMCG00016415
AMCG00016416 mRNA upstream 260059 19239187 ~ 19251854 (+) True AMCG00016416
AMCG00016432 mRNA downstream 246161 19758327 ~ 19799814 (+) True AMCG00016432
AMCG00016430 mRNA downstream 299236 19811402 ~ 19814610 (+) True AMCG00016430
AMCG00016431 mRNA downstream 354112 19866278 ~ 19869018 (+) True AMCG00016431
AMCG00016429 mRNA downstream 362890 19875056 ~ 19879725 (+) True AMCG00016429
AMCG00016438 mRNA downstream 373592 19885758 ~ 19898268 (+) True AMCG00016438
TU16114 other upstream 2389981 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3025910 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3025910 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3026765 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5073307 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4567851 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 5022852 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5495796 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5621032 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5638317 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile