RNA id: TU16825


Basic Information

Item Value
RNA id TU16825
length 2208
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G13593
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20014944 ~ 20018086 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGAGAACAAGAGTGggatttaaagttttattagAAATACATTACGTTTAATTCTATTctaatcatacaaaataatccTGTATGCTTAGGTTGTATAGAGGGGAAAGCACATATGTCATGTTGTACAAATCAGAAATGTTACACACATGTCGTTTTTACAGCACACCCAGTTTATATTCTGCCATGATATGAGGCTCACCCATGACTTCGCTCTGTGCTGGACATTCAAGAAGTCTTCAAATCCAATTGCCTCATCATTGCCTCTGAGAGTATCTAGTGCGATATTTGAGCTCTGAAGGAATGGCAGGCGCTGTATCTGTAAATACATTACCTGTCGTGCTGCCCTGTACTCCATCTGAAGTTTCAAAGGTGCATGAAGCCCCTGAATATTTCTGAGTGTCGTAAAGTTCATCTTATCTTGGTTGAGCTGAAACTGTTAAAAACCGAGAATGAGCATTAAGGACATTAGACTGTGATTTTCGGATGGTGTAATTTACtgcaaaatgtttcatttggggataataaataaatacataaacctcAATCTTAACTGAATTAATGTGATAACATGGTGAGCAATAACATATGCTAGAAGTAGCAATCACTCTCAACTGTAAGAGTTAAATTACTTAAGGAGTGTAgattacaaaattgtattttgtatgttgtgTGCTCTTTCATAATgctaagtcaccctggataagggcatcggCTTAAAAAATATAGTAACTCATTAGTAGACTCATAGTAACATTTTAAGTGTAAATTGAAGGTACCAGTTTACACAGGTCTTGAATATCAATTTACTATACAGAGAAGGCTTCACTTGACATGCGTCTGTAGTGAGTGGTAGTGAGATGGATTATGACACTGAAAGCTATTGCgtttaaacaaaagaaactcAAACTTGAAAACTCAAATGggatgaataaaaataaagaacaaagtCAGAAGAGAGgtgtaaataaattgtattgtgcttgatttataatttgtaCTGTAGTATTGCACTTCTGTATTGCTCTTGTAACCTGTAagtggccctggataagggcataaataaattaaataaaccctgAAATGAAAGCAGTGGGACACTTACATTCTTCTCAGAGAGCTCCAGGGGATGACTGGGCAGAAGCTCATTCTTCACACTGCTGAAGCTGAGCCCAGAGACAGGAAGGGGTGAAACTGCTCAATATGGGGTTTCGGAGCACTCACTGTGCATATATTAGCTCTCAAGCCTTCCTATTATGCTTTATACAATTCAATGTATAGAAACACCTGTTTAACATCATTAGTGTGTCACGCTTACATGGAAACCAGCATTATGCCATTATATGTGCACTGTACGATATGGACTTGTAGCTGGCAGGCAGATTGCTGCtattgaatgtcatttaaaacaCGTACATGCAGTAATTTAGcttcaataaaacaacaagTAATAATAGTGGAATAATCAAGCTTGGTTCATAACTCAGGATAACAGGCATTCATTAAAGACAGTGCAGACCGCTCACCCCTTGCGCAGTGTGTCCGGTACCCCGTAAGCCCCTGCTTGGGGACAAAGCCCTGTGACAGGGACGCTGTCCTTCAGCTGGGAGCGCAGGCCTCTGGTATTCTGTAACACATGTGAAGCAGGATGTGATCATGGATGTGTTGCACACCTTGATTGTCACGCTTAGTTTAACTGCAAATGAACGACGTCTCTCAGCTTCGAAGACAACCGCTGACTTTCGGTTTCATTTGTATCCGCTGACAAACTGATCACGCTTTTCTTTCCCTGCTCCGCCACGAAGCAATGGAGTGTCTCTGGAGCTCAAATACAGGGTTGATCACACTAATAACGGGCTATGAAGTCAGACGTGCTACATTGTCAGCACACAAGATGAACACAAGGCCTCAATATTGTAGTTTGCTGCGAAAATGaatgcacacacagcagtgaCTAATCAGAACTAAGCAAATcgttattttcaaaacaaaccctACATTTCCCATCATCGGGGGAAAAGGGTCTGttcataacattaatttaaaagcagtATTATAGGATatttctgtataaaaataaataaagtaagcGAAAAGTTTACTTACCATTTCGTGTAATGTGCTGCTTCACTGTGCGATACACCGAGTCACACCGTAGACTTCCGGGCCGCGTCTGAAATAACACACGTGACAAATTACGCAACTTCCG

Function

GO:

id name namespace
GO:0000151 ubiquitin ligase complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16797 lncRNA upstream 135228 19875100 ~ 19879716 (+) False AMCG00016429
TU16709 lncRNA upstream 449832 19564800 ~ 19565112 (+) True G13500
TU16705 lncRNA upstream 502778 19511913 ~ 19512166 (+) True G13496
TU16704 lncRNA upstream 544488 19470175 ~ 19470456 (+) True G13495
TU16703 lncRNA upstream 544846 19469635 ~ 19470098 (+) True G13494
TU16833 lncRNA downstream 13407 20031493 ~ 20032916 (+) True G13599
TU16913 lncRNA downstream 201357 20219443 ~ 20256020 (+) True G13659
TU16917 lncRNA downstream 268989 20287075 ~ 20289834 (+) True G13662
TU16940 lncRNA downstream 300931 20319017 ~ 20319339 (+) True G13681
TU16941 lncRNA downstream 323988 20342074 ~ 20344085 (+) True G13682
AMCG00016450 mRNA upstream 35 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016451 mRNA upstream 5085 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016441 mRNA upstream 9005 19998432 ~ 20005939 (+) True AMCG00016441
AMCG00016439 mRNA upstream 76271 19911840 ~ 19938673 (+) True AMCG00016439
AMCG00016438 mRNA upstream 116676 19885758 ~ 19898268 (+) True AMCG00016438
AMCG00016449 mRNA downstream 41257 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016448 mRNA downstream 86830 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016457 mRNA downstream 290893 20308979 ~ 20316754 (+) True AMCG00016457
AMCG00016458 mRNA downstream 310619 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016456 mRNA downstream 332562 20350648 ~ 20353506 (+) True AMCG00016456
TU16114 other upstream 2893012 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3528941 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3528941 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3529796 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5576338 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4061931 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4516932 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4989876 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5115112 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5132397 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile