RNA id: TU16941


Basic Information

Item Value
RNA id TU16941
length 1705
lncRNA type inter_gene
GC content 0.63
exon number 2
gene id G13682
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20342074 ~ 20345072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCTGTACTGgcgtttattatttttcttggtgAATAGAACAGACAATCTTCATGTGCGATTTCACGAGTCATTTATAGGAAGTGCAATGGTGTATGACAGCATGAAATTACAAAAGCCTGAACAACAAGAATTAGTTTAGAAATTACAGCACATGGGAACAGAAATGGACCAGAGCACGCATTTGTTCAAAACGTTTTAATTGGTTTTCAATGACAGCTGTTGGCGATACTATCAAACCTCCACGTGATCCCAAAACTAACCTCTTGTATGTATAAATTAGGCAAATTTGTAATGGAAGATACACAactcctttttaaaatgcagaaccCTAGGATTCCAGTCCAGAGCCCGGGTGGGTATTCACCACAGCTCTGCAGTGTTGGACAGGCGTCGGGTGGGGTGCCAGGTACACGGTGGTCCGGCCGACTCTCAGTCATCGTCTACGGTGGGCTTGATTGTTACGCCTCTCCTGATCTGACCCCAGCCGATTAAACtagatgaaaacaaaagggGGGGAATACATTAAACAACCTAATATCACCATTTTGTAAAATTGGAGCCTCGAGTAAAAAGGTAGTTACCGCCAATGCTTCTCCACTCTCCGGCTCAAGGCGATCTTCTCCCCCACCTCGGTGCACACGGGGTTGGTCAGCACAATCTTGGCAAGGTCAGCCTTCACCGCGCTTACTCTGCCGCCCGTCGACAGGGACCCGATGTTCACCATCAGAACCTCATTCTTAGACAGCTTTTGGACCTGGGGCAAAAGAATAGAAGCTATTACTTCTTGAGACATACAGCAGCATATACCGCGATTTGAGGGATTACAGATTTACGGTTACGCATCAGAAAAATTAGTTTGAACCTTTGAATTGGGTCTACTGAGCATGAACATCGCAGCCGTAGAAAGTATGTTATTTCTCTTAACCCAAGCCTTCTCTCTTCTTCAGCAATCAGTGgatgtggatttgtttttgtccagCCATCCATAAAACCAAGGCAAACTATTGTACCTTCAATGCACCACTAGGTTCGGTGCAAGCAAGCAAGTGCCTACttgtgcagttgtttttttaacttcactACAGAtcccacagagctgcagagggCTAAACTGCCTGGGATACTGAAGGAAACGCTTTGTGCGCACACCCAGCAGTCTGCGCAGGAGGAAGTAGGAGATCTCCAGCTCGGTAAAGATCTCGGGGAGTGCGCCCACAGCCCCCAGGACCTGGCCCACCATACGGTCCGCCCGGCACAGTGTGGGATCGATCTTCGTGCCcacacctgcaacacacacagggtgTCGGTCATTGCCAACTCCAGAGGGGAACTGCATCAGATTATTTGATAtacaacacaacagaaaaatataaaaaccctCCACGTGCTGAGCGGCTAGTACTCTGTGGTGGTGAACCCGTTATTAAAGAACAAGCTTCCTAGGACTACCAAATCAGTTTTGGTGtgaaaacacacaattatacagTGTAGCAATTATGCCTCCTCTGGCATCAGATTAAAtctacaaataaacattaagaAAATCTACCATACCGATGAGGCCCCCAGGAGCAGCGTACTGCAGGTCATTGTGCTCTGCAAACAGCGAGACAATTTTGGAGAAGATGGGCTTGCACATGAGCTTCCCCTCGTGGTCTTTGGACACAATACCTGGCCTCACCTCGATCTCCTGACCCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16940 lncRNA upstream 22735 20319017 ~ 20319339 (+) True G13681
TU16917 lncRNA upstream 52240 20287075 ~ 20289834 (+) True G13662
TU16913 lncRNA upstream 86054 20219443 ~ 20256020 (+) True G13659
TU16833 lncRNA upstream 309158 20031493 ~ 20032916 (+) True G13599
TU16825 lncRNA upstream 323988 20014944 ~ 20018086 (+) True G13593
TU16951 lncRNA downstream 49426 20393511 ~ 20403506 (+) True G13685
TU16972 lncRNA downstream 80052 20424137 ~ 20425842 (+) True G13700
TU17090 lncRNA downstream 270660 20614745 ~ 20617697 (+) True G13791
TU17100 lncRNA downstream 302750 20646835 ~ 20652272 (+) True G13798
TU17101 lncRNA downstream 309585 20653670 ~ 20655615 (+) True G13799
AMCG00016458 mRNA upstream 10299 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016457 mRNA upstream 25320 20308979 ~ 20316754 (+) True AMCG00016457
AMCG00016448 mRNA upstream 215790 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016449 mRNA upstream 277452 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016450 mRNA upstream 327165 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016456 mRNA downstream 6563 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016469 mRNA downstream 36528 20380613 ~ 20392489 (+) True AMCG00016469
AMCG00016467 mRNA downstream 64218 20408303 ~ 20419818 (+) True AMCG00016467
AMCG00016466 mRNA downstream 82408 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016465 mRNA downstream 91682 20435767 ~ 20440084 (+) True AMCG00016465
TU16114 other upstream 3220142 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3856071 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3856071 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3856926 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5903468 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3735932 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4190933 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4663877 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4789113 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4806398 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile