RNA id: TU17100


Basic Information

Item Value
RNA id TU17100
length 5438
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G13798
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20646835 ~ 20652272 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcGCAATTCAGTAAAGTACAGGAAAGTACTAGAGTTTTTATTCCTTCATATTCAAACTTCACAAACAGCGTGAACTTGTACAATACCTCAGAAAGTGaaacttacaaaaaaaagtgctgGTAACATTTACAAAAGAATCTTCATCCTTACTTAGCAACAATCAGTTTATTCTTCcacacaaagttttttttttatttttatttttttttagtctttTGTATTAAGGCTTAATACTTCTGTATAAAGTATATGCAAGATAAGTCTTCACAGTATTTCGAAAAAAGTCACAATAATATGTAACATAATGAAGCATTTTACGgctattttctttataataacaaatacacatcACAGGTAAATATATGTGAAAATACAGGGCTAACTTTAAATGGCAAGTTAGGATACTGTCGACTAAAATAAAactggtattttttatttttattttttttcatttttaaagcacttGAAAGAAAGGTGTACATTATATATCATAGAAATGACATACCATTGTTATAACTAAAAGCAGagggaaaatgaaacaaaactgaaacaaaaaaaacaacgtGGAGATCGCCTCAAAAACTTTGGCACatccctttaaatatttttataaaatagatAAAGGTTTCTTCTTAAATTATATGCAAGGCAGTTTAGCAACACAGGCATAATGCTGGACAGGAACTGAAACACAGTAGACTTAAAACATACTGTATAGTAAGGTGCTAAATGAGAGATTAGAGTGCCAATCCTCCATTCAGATCAGCACGGATAAGGTGCATTTAAAGTCTCATGTAGCTTTTATGCttttttctagtttatttcttttttttttctctgaagaaaaattaacaaacaaagaaacaaactaacaaaaaaacagaaaaagtggCCAATAGTCTCAAGGCGACCTCTTACATCTTCCATAGATAGTTTGTGttggaaacaaaaagaaaatgaaacatgctCATTCTTTTTCCGTGTCTTTTACCACAACCGCTCCATCATGGCAAGTGgaatcattaaatatataagatTTCCTTTTGTCTTCATTCTAATAATTTTATGTTGtcgttgtttttattttggatttttggagaaaggaaaaaaaaaaaatcactgcaaACCTGTGGATTGTGAGGGAGATAGGAAGATCTCGTACCCAAAAGCAGCACGGAATACAGGGGAGATATTTCAGAGGATTTCATGAGGGATCAACAGATCGGTTTCCAGAGATTCCCTGATCTCGATCTTCCCGATTGACCTCAAATAGTTCCACATCTCTAGAATGTTATCCGTAAAAAGCTTGGCTTCTTCGATAACAAATACTGCTAAAACATTTACTGGAAACACCATTGCCTGGAATGGCTTAAGCTTTTcaactgtttgtgtttgtgtttgtttaacaaGCTTAGCAAGAAATTATCAGAAGGCACATACCTATGCTTCCTCTATTGTGTGATACGTTTAGACACACAGCaccatatttttttcaatgaatACCCCAAAGcggttaaataataataataattttctatattattactatttcctcattgctcttctctctctctacatatatagctttatatatatcatgtttGTGTCTGGTGCTATACACGATTTGTTTGGATGCTTCGAcgtttatgtctgtgtgtgtgtatctgtgtgtgggtgtggaaTCATGCAATTCACATTCCTTTTCGTTCAAATTTGTCAGTGTTCATCGCTCTTTATATACGTAGTGTGCAATGAGGCTTTGATTTCCCATCCATGTGCTAAAAATATCACCAgaggaaacacagaaaaaaggaGATCAAAAAAAAATTTGAGCACATGTGCCCAGGCGGGATGATTTCATCTTCCGACtcagacacatttgttggtTTACTTGAAAGTTACCAAGAAATCAGGACTGTGACAGCTTAGTACACATCGACTAAGAAGATGAAATCCATCTAAAATATCCCCTTTTACACTTCATTACCTGCGTACACagacagttttctttctttcttgttttgtcttttattttgttttgagaatGTCTACTTTCTGATGTTGTGTATTGCTATTGATCCATGAAACCAAGTTGACTTTAGTGCAaatctcttttctgttttgagaAGTGAAAACCAGCTCTGCACTGATCACAAccttattttacaaatacaaatggagGTTACGTCAGAGCTTGATTATAATGTTCTCCTGAAAAAACAATGGATATTGACATAGTGGTAATGCAAAATTTCAAgtcttttataaatatatatatttcttacattttatgttCCTCAATTGTTTGATTGTAATTGAGTGGTTTCCCTTTTTAGTACAGAACACCaagatagaaatagaaaaatttgttttctttgggacagtgatcattttttttttttttttttttttttacataaacctTCAGAACAGGGGCTCAGTATCCAAATGATAATTCCTGCAACCCTCTGGACATACTAAATTTCTTCTCGTAAATCAGCTCAGCATCTGTTTGCTAAAAAGGGTGAGCCTGGTCttcatatgtatttttgaaaagacaagaaaagacaattacatttcagctAATTTTTTTCAGAGGGTGGAAATCGGGTGACAGCCATTCAGAGGATCTTATGAATCACATTCACTTTACCTCTCAGGAAACCATAACTGTCCCGTTGTGAGTAAATAAGTGTAAGAGACTGAATTTCGTGCTGCTTGTTTTCTCCTATAATTGTCCTTAAACTCTACATATCAGTAACACACTCACAGTCCAGTGTCTTTGACAATGAGAGTATAAAACGCCCTTGTATAAAAAATCCCCTTATTACCTATCTCAAAACAGCAgtcattacattacaaactttgtttttcatttgtaacaataataataaaaaaagacaataaaaccaATTTAGAACACACATGAAGAATTAGAGTTGAAAAAACATTACTGCAGCATATCCATAAGggcaaacttgtttttttttaatcttaaattcCTTTCACCTAAACAGCTCAAATTCcatcgtttttttttcctgtttttttgttgttaacattttacattaacttATAAAATAGTATGCCAATTAAAATCAGACAACAAACCAACTcggaaataaaatgttcaaaacagtATAAAACGTTGAATCATTTTGATAAAAAGGGCATCGTTTGCATAAAATATGGAAgatgtggaaataaatattaaaatgttcctttcttgaagaaaagatgaaaaaaaaaaagcaatgacaAAACAACTTTCAATACTACTGGATTGTATTCAGGGTACCCTGGAATATGTGGTTTGTCACTGTAGGAATTGATTCTGCAATGTGTTAAAGAAGCAGACACTGATCATCGAACCTCTCTCAGTTCCATGTGCGGTACATGTATACAAATTGAATGTCAGGAAGCAGTTTTGGAACAACTAAACAAATTGTCAGAAAAGTATATTGATGCTTAAATATTCGAAATAAATTACCACCTTACCACTAAAAGCCATTTCTTTTCAAACAAATTGACGACAATATGTTCACTGATATATTCTGTGAAGCATACCCCTCAAGAACAGACGCCAACACTAACTGGAAATGAGACCGTGCTTCACCATAAAGCTAAATATTCTTTATTGTACATCGAGATTCTTAAATACTGTTACATTCTGCCTTTGATATGAGGAAAATATCTGGTTTGTCTCTAATAAAAGCCCCtagacttaaaaaaatacactaccTACAGAAAACACTTGTGCTATCTAGAAATAGGGATTTTGGTCCTTAGAGGTACAATGCTGACACAAAACGATGCcaccaaaatatatacatatattatttttgatgtCAAGCTGTCATTAGCGTGAAACACTGTAACAATGCTAGATTACATTTTACGCGGGcctcagaaacaaaatgtacatttataacaaGGGCATGgttttaaaagaatataaatTCACGTTCAGCAGTAATAGGTTAATATATAATGGCTATAGTGCGGCCGGAATCTTGGCTCAATTTATGTCTCCGTTGTGGATCTGAACTTGGATTAATAATGTCTTGGGtcattataacattatttgttttcttttcctagCTACTAGAACTAAACGAAACAGTAACACATTGCCTTAACCAATTAGTATGTCTGTGCAAACAACAAAGTTCAATCCTTTTCAAAGTTCAAGTTCAAAGTGTGAATCCTTTTAATTGAACTGCCCAGGGAACACTTTTGTATGGAGAGAATTTAGTCATGGGAGTATCGGTAGCTAGAGGAAACAGGACAACATTCagcacagaagaaaaacaattgcaCATCGCGGGTTTGCTTGGGAGATGTTTCACCAATCCAGTGTGTTCCATTGATACAAAACTAGAAACACCTCGAGAAAACTACCACAACCTTCAAATGAAACAGAGCgcgacaataaaataaaataaaaaggcagaccaaacaaaaatattggtctattacaaaacaacagcaactgcAAGGGGAAAGAGTGCAAAGCATGTTTAGAAACATACgaagaagaacaaaaagctATTCAAATAGTCACTAATCTGAAATAAACTGTAGGCAAAGTAACCAATAATTATGCTACATTTACAATCATCTAAAAGTCATAACATGCTATTGTCTTCATATTACTGGTAATacatatgcttaaaaaaaaaaaaaaaaagatttgtttgtttaaaaaaaaaattgtaatttggTCTACAGtagttaaataaacacaagtatTAAACTACAGTGTTCTAATAGTGTTTATGTTTAGCGTTGaacaatatgaatacatttctgGAGAACTTGAATCTGGCTTCTCTGTAAAGTGAACGGACACAGTCCACTTTTGTTTCCTTCCCGAAAGATCGAACTGCAACTACGGACACTAGCTACACAaccaacaaaagaaagaaatattaaccataaaatgcattgtggtcAAGTGTCTCCCGATGAACACAGTTTCAATAAGATTTAATTATTAGATTCATAGGTTTTCAAAGGGGGAACTGCAAGCTTTCACACTCTGTCAACAATTCAATTTACAGTGTGGTTCAAAGCTGTGTGGCCACAGAGTGCTGATACAATAGAAACCTATTCCCAACAGACAACAGAATCCCACAGATGGCTGGGAGAGCTGAGCAGAAGGATCTCTTCATCTGTGGGTCACAAAAATAGCTTTCAAGCAGTGTTGTTATTGTAATCGAAAATAATTATGACCTTACGTAGcctgagggggaaaaaatatataaaaagggcAGTGTTTCATCCAAGACACCCATCCATTCACCTCTGAATGGAAGGCTTTTGCGAATTCCCATAGTTGCAGCACAAAGATCCCACATTGCAAATTTCTATCCCTCTCACTTCAGTGCTATTCCTACTCAATACAAAAGGGTTTTGGAAAACAGGAAGCTGACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17090 lncRNA upstream 29138 20614745 ~ 20617697 (+) True G13791
TU16972 lncRNA upstream 220993 20424137 ~ 20425842 (+) True G13700
TU16951 lncRNA upstream 243329 20393511 ~ 20403506 (+) True G13685
TU16943 lncRNA upstream 301763 20343424 ~ 20345072 (+) False G13682
TU16941 lncRNA upstream 302750 20342074 ~ 20344085 (+) True G13682
TU17101 lncRNA downstream 1398 20653670 ~ 20655615 (+) True G13799
TU17170 lncRNA downstream 1142990 21795262 ~ 21832148 (+) False AMCG00016490
TU17191 lncRNA downstream 1269881 21922153 ~ 21922461 (+) True G13873
TU17213 lncRNA downstream 1583899 22236171 ~ 22236399 (+) True G13892
TU17215 lncRNA downstream 1677791 22330063 ~ 22330299 (+) True G13894
AMCG00016478 mRNA upstream 51910 20581946 ~ 20594925 (+) True AMCG00016478
AMCG00016474 mRNA upstream 144646 20499298 ~ 20502189 (+) True AMCG00016474
AMCG00016475 mRNA upstream 163839 20478055 ~ 20482996 (+) True AMCG00016475
AMCG00016468 mRNA upstream 180545 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016465 mRNA upstream 206751 20435767 ~ 20440084 (+) True AMCG00016465
AMCG00016482 mRNA downstream 220121 20872393 ~ 20876476 (+) True AMCG00016482
AMCG00016490 mRNA downstream 1129834 21782106 ~ 21804502 (+) True AMCG00016490
AMCG00016489 mRNA downstream 1209516 21861788 ~ 21904114 (+) True AMCG00016489
AMCG00016493 mRNA downstream 1253110 21905382 ~ 21906361 (+) True AMCG00016493
AMCG00016495 mRNA downstream 1281882 21934154 ~ 21935071 (+) True AMCG00016495
TU16114 other upstream 3524903 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 4160832 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 4160832 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 4161687 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 6208229 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3427745 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 3882746 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4355690 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4480926 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4498211 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile