RNA id: TU17108


Basic Information

Item Value
RNA id TU17108
length 5433
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G13806
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20646836 ~ 20652268 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCTTCCTGTTTTCCAAAACCCTTTTGTATTGAGTAGGAATAGCACTGAAGTGAGAGGGATAGAAATTTGCAATGTGGGATCTTTGTGCTGCAACTATGGGAATTCGCAAAAGCCTTCCATTCAGAGGTGAATGGATGGGTGTCTTGGATGAAACACTgccctttttatatattttttccccctcaggCTACGTAAGGTCATAATTATTTTCGATTACAATAACAACACTGCTTGAAAGCTATTTTTGTGACCCACAGATGAAGAGATCCTTCTGCTCAGCTCTCCCAGCCATCTGTGGGATTCTGTTGTCTGTTGGGAATAGGTTTCTATTGTATCAGCACTCTGTGGCCACACAGCTTTGAACCACACTGTAAATTGAATTGTTGACAGAGTGTGAAAGCTTGCAGTTCCCCCTTTGAAAACCTATGAATCTAATAATTAAATCTTATTGAAACTGTGTTCATCGGGAGACACTTgaccacaatgcattttatggttaatatttctttcttttgttggtTGTGTAGCTAGTGTCCGTAGTTGCAGTTCGATCTTTCGGGAAGGAAACAAAAGTGGACTGTGTCCGTTCACTTTACAGAGAAGCCAGATTCAAGTTCTCcagaaatgtattcatattgttCAACGCTAAACATAAACACTATTAGAACACTGTAGTTTAatacttgtgtttatttaactaCTGTAGAccaaattacaattttttttttaaacaaacaaatctttttttttttttttttaagcatatgtATTACCAGTAATATGAAGACAATAGCATGTTATGACTTTTAGATGATTGTAAATGTAGCATAATTATTGGTTACTTTGCCTACAGTTTATTTCAGATTAGTGACTATTTGAATagctttttgttcttcttcGTATGTTTCTAAACATGCTTTGCACTCTTTCCCCTTgcagttgctgttgttttgtaatagaccaatatttttgtttggtctgcctttttattttattttattgtcgcGCTCTGTTTCATTTGAAGGTTGTGGTAGTTTTCTCGAGGTGTTTCTAGTTTTGTATCAATGGAACACACTGGATTGGTGAAACATCTCCCAAGCAAACCCGCGATGtgcaattgtttttcttctgtgctGAATGTTGTCCTGTTTCCTCTAGCTACCGATACTCCCATGACTAAATTCTCTCCATACAAAAGTGTTCCCTGGGCAGTTCAATTAAAAGGATTCACACTTTGAACTTGAACTTTGAAAAGGATTGAACTTTGTTGTTTGCACAGACATACTAATTGGTTAAGGCAATGTGTTACTGTTTCGTTTAGTTCTAGTAGctaggaaaagaaaacaaataatgttataatgaCCCAAGACATTATTAATCCAAGTTCAGATCCACAACGGAGACATAAATTGAGCCAAGATTCCGGCCGCACTATAGCCATTATATATTAACCTATTACTGCTGAACGTGAatttatattcttttaaaacCATGCCCttgttataaatgtacattttgtttctgaggCCCGCGTAAAATGTAATCTAGCATTGTTACAGTGTTTCACGCTAATGACAGCTTGacatcaaaaataatatatgtatatattttggtgGCATCGTTTTGTGTCAGCATTGTACCTCTAAGGACCAAAATCCCTATTTCTAGATAGCACAAGTGTTTTCTGTAggtagtgtatttttttaagtctaGGGGCTTTTATTAGAGACAAACCAGATATTTTCCTCATATCAAAGGCAGAATGTAACAGTATTTAAGAATCTCGATGTACAATAAAGAATATTTAGCTTTATGGTGAAGCACGGTCTCATTTCCAGTTAGTGTTGGCGTCTGTTCTTGAGGGGTATGCTTCACAGAATATATCAGTGAACATATTGTCGTCAATTTGTTTGAAAAGAAATGGCTTTTAGTGGTAAGGTGGTAATTTATTTCGAATATTTAAGCATCAATATACTTTTCTGACAATTTGTTTAGTTGTTCCAAAACTGCTTCCTGACATTCAATTTGTATACATGTACCGCACATGGAACTGAGAGAGGTTCGATGATCAGTGTCTGCTTCTTTAACACATTGCAGAATCAATTCCTACAGTGACAAACCACATATTCCAGGGTACCCTGAATACAATCCAGTAGTATTGAAAGTTGTTTtgtcattgctttttttttttcatcttttcttcaagaaaggaacattttaatatttatttccacatcTTCCATATTTTATGCAAACGATGCCCTTTTTATCAAAATGATTCAACGTTTTATactgttttgaacattttatttccgAGTTGGTTTGTTGTCTGATTTTAATTGGCATACTATTTTATaagttaatgtaaaatgttaacaacaaaaaaacaggaaaaaaaaacgatgGAATTTGAGCTGTTTAGGTGAAAGgaatttaagattaaaaaaaaacaagtttgccCTTATGGATATGCTGCAGTAATGTTTTTTCAACTCTAATTCTTCATGTGTGTTCTAAATtggttttattgtctttttttattattattgttacaaatgaaaaacaaagtttgtaatgtaatgacTGCTGTTTTGAGATAGGTAATAAGGGGATTTTTTATACAAGGGCGTTTTATACTCTCATTGTCAAAGACACTGGACTGTGAGTGTGTTACTGATATGTAGAGTTTAAGGACAATTATAGGAGAAAACAAGCAGCACGAAATTCAGTCTCTTACACTTATTTACTCACAACGGGACAGTTATGGTTTCCTGAGAGGTAAAGTGAATGTGATTCATAAGATCCTCTGAATGGCTGTCACCCGATTTCCACCCTCTGAAAAAAATTagctgaaatgtaattgtcttttcttgtcttttcaaaaatacatatgaaGACCAGGCTCACCCTTTTTAGCAAACAGATGCTGAGCTGATTTACGAGAAGAAATTTAGTATGTCCAGAGGGTTGCAGGAATTATCATTTGGATACTGAGCCCCTGTTCTGAaggtttatgtaaaaaaaaaaaaaaaaaaaaaaaatgatcactgtcccaaagaaaacaaatttttctatttctatcttGGTGTTCTGTACTAAAAAGGGAAACCACTCAATTACAATCAAACAATTGAGGaacataaaatgtaagaaatatatatatttataaaagacTTGAAATTTTGCATTACCACTATGTCAATATCCATTGTTTTTTCAGGAGAACATTATAATCAAGCTCTGACGTAACctccatttgtatttgtaaaataaggTTGTGATCAGTGCAGAGCTGGTTTTCACTtctcaaaacagaaaagagattTGCACTAAAGTCAACTTGGTTTCATGGATCAATAGCAATACACAACATCAGAAAGTAGACattctcaaaacaaaataaaagacaaaacaagaaagaaagaaaactgtctGTGTACGCAGGTAATGAAGTGTAAAAGGGGATATTTTAGATGGATTTCATCTTCTTAGTCGATGTGTACTAAGCTGTCACAGTCCTGATTTCTTGGTAACTTTCAAGTAAaccaacaaatgtgtctgaGTCGGAAGATGAAATCATCCCGCCTGGGCACATGTGCTCAAATTTTTTTTTGATCtccttttttctgtgtttcctcTGGTGATATTTTTAGCACATGGATGGGAAATCAAAGCCTCATTGCACACTACGTATATAAAGAGCGATGAACACTGACAAATTTGAACGAAAAGGAATGTGAATTGCATGAttccacacccacacacagatacacacacacagacataaacgTCGAAGCATCCAAACAAATCGTGTATAGCACCAGACACaaacatgatatatataaagctatatatgtagagagagagaagagcaatgaggaaatagtaataatatagaaaattattattattatttaaccgCTTTGGGGTattcattgaaaaaaatatggtGCTGTGTGTCTAAACGTATCACACAATAGAGGAAGCATAGGTATGTGCCTTCTGATAATTTCTTGCTAAGCttgttaaacaaacacaaacacaaacagttgAAAAGCTTAAGCCATTCCAGGCAATGGTGTTTCCAGTAAATGTTTTAGCAGTATTTGTTATCGAAGAAGCCAAGCTTTTTACGGATAACATTCTAGAGATGTGGAACTATTTGAGGTCAATCGGGAAGATCGAGATCAGGGAATCTCTGGAAACCGATCTGTTGATCCCTCATGAAATCCTCTGAAATATCTCCCCTGTATTCCGTGCTGCTTTTGGGTACGAGATCTTCCTATCTCCCTCACAATCCACAGGTttgcagtgattttttttttttcctttctccaaaaatccaaaataaaaacaacgaCAACATAAAATTATTAGAATGAAGACAAAAGGAAatcttatatatttaatgattcCACTTGCCATGATGGAGCGGTTGTGGTAAAAGACACGGAAAAAGAATGagcatgtttcattttctttttgtttccaaCACAAACTATCTATGGAAGATGTAAGAGGTCGCCTTGAGACTATTGGccactttttctgtttttttgttagtttgtttctttgtttgttaatttttcttcagagaaaaaaaaaagaaataaactagaaaaaaGCATAAAAGCTACATGAGACTTTAAATGCACCTTATCCGTGCTGATCTGAATGGAGGATTGGCACTCTAATCTCTCATTTAGCACCTTACTATACAGTATGTTTTAAGTCTACTGTGTTTCAGTTCCTGTCCAGCATTATGCCTGTGTTGCTAAACTGCCTTGCATATAATTTAAGAAGAAACCTTTatctattttataaaaatatttaaagggatGTGCCAAAGTTTTTGAGGCGATCTCCacgttgttttttttgtttcagttttgtttcattttccctCTGCTTTTAGTTATAACAATGGTATGTCATTTCTATGATATATAATGTACACCTTTCTTTCaagtgctttaaaaatgaaaaaaaataaaaataaaaaataccagtTTTATTTTAGTCGACAGTATCCTAACTTGCCATTTAAAGTTAGCCCTGTATTTTCACATATATTTACCTGTgatgtgtatttgttattataaagaaaatagcCGTAAAATGCTTCATTATGTTACATATTATTGTGACTTTTTTCGAAATACTGTGAAGACTTATCTTGCATATACTTTATACAGAAGTATTAAGCCTTAATACAaaagactaaaaaaaaataaaaataaaaaaaaaactttgtgtgGAAGAATAAACTGATTGTTGCTAAGTAAGGATGAAGATTCTTTTGTAAATGTTACcagcacttttttttgtaagtttCACTTTCTGAGGTATTGTACAAGTTCACGCTGTTTGTGAAGTTTGAATATGAAGGAATAAAAACTCTAGTACTTTCCTGTACTTTACTGAATTGCg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17099 lncRNA downstream 9898 20630472 ~ 20636938 (-) False AMCG00016479
TU17088 lncRNA downstream 48071 20595329 ~ 20598765 (-) True G13789
TU17050 lncRNA downstream 133432 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA downstream 154815 20486881 ~ 20492021 (-) True G13766
TU16939 lncRNA downstream 330257 20315742 ~ 20316579 (-) True G13680
TU17110 lncRNA upstream 13874 20666142 ~ 20666980 (-) False AMCG00016480
TU17114 lncRNA upstream 109155 20761423 ~ 20761693 (-) True G13812
TU17121 lncRNA upstream 255650 20907918 ~ 20908118 (-) True G13819
TU17178 lncRNA upstream 1129796 21782064 ~ 21782296 (-) True G13860
TU17179 lncRNA upstream 1132976 21785244 ~ 21785716 (-) True G13861
AMCG00016479 mRNA downstream 9876 20616509 ~ 20636960 (-) True AMCG00016479
AMCG00016476 mRNA downstream 123079 20517799 ~ 20523757 (-) True AMCG00016476
AMCG00016477 mRNA downstream 136368 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016471 mRNA downstream 199805 20441545 ~ 20447031 (-) True AMCG00016471
AMCG00016470 mRNA downstream 221086 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016480 mRNA upstream 14482 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016481 mRNA upstream 271712 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016483 mRNA upstream 334724 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016484 mRNA upstream 421826 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016485 mRNA upstream 1036543 21688811 ~ 21709689 (-) True AMCG00016485
TU16905 other downstream 511289 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1541455 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3785657 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 2802824 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3046881 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3658769 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3658769 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4228880 24881148 ~ 24882098 (-) True G14305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1017691 False 2224 lncRNA 0.36 2 NC_048574.1 46799901 ~ 46810823 (+)
tiger barb (Puntius tetrazona) TU210631 True 3104 lncRNA 0.34 2 NC_056718.1 27512412 ~ 27536935 (+)
mexican tetra (Astyanax mexicanus) TU430247 True 3250 lncRNA 0.36 3 NW_019172863.1 1495587 ~ 1499232 (-)