RNA id: TU17178



Basic Information


Item Value
RNA id TU17178
length 233
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G13860
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21782064 ~ 21782296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATCCTATGACATCctgaaacattaatttctgaGATCTGTCCCGATGATTCAGCTGCCGGACAATGTGACGTTTCCATCTTTCGGGGGTCTTTGTGGTGGGGCCGAGCCTCTCCGCTGCTCTAGCCGACTCTGAGGTCTCAGACGCGGCCATCGTCCACAGCGAGAGCCAACATTGACCAACAGTGCAGGGTACTTCCGTATGACGTCATGGCGAAGTGCCGAAGCCGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17121 lncRNA downstream 873946 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 1020371 20761423 ~ 20761693 (-) True G13812
TU17110 lncRNA downstream 1115084 20666142 ~ 20666980 (-) False AMCG00016480
TU17108 lncRNA downstream 1129796 20646836 ~ 20652268 (-) True G13806
TU17099 lncRNA downstream 1145126 20630472 ~ 20636938 (-) False AMCG00016479
TU17179 lncRNA upstream 2948 21785244 ~ 21785716 (-) True G13861
TU17202 lncRNA upstream 359657 22141953 ~ 22142185 (-) True G13884
TU17205 lncRNA upstream 390254 22172550 ~ 22172940 (-) True G13887
TU17211 lncRNA upstream 407620 22189916 ~ 22226828 (-) True G13891
TU17214 lncRNA upstream 453875 22236171 ~ 22236399 (-) True G13893
AMCG00016485 mRNA downstream 72375 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016484 mRNA downstream 536646 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016483 mRNA downstream 769703 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016481 mRNA downstream 808854 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016480 mRNA downstream 1099040 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016486 mRNA upstream 128574 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016488 mRNA upstream 166972 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016487 mRNA upstream 234828 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016497 mRNA upstream 295321 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016504 mRNA upstream 2058766 23841062 ~ 23862739 (-) True AMCG00016504
TU16905 other downstream 1646517 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 2676683 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 4920885 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1672796 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1916853 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2528741 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2528741 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 3098852 24881148 ~ 24882098 (-) True G14305

Expression Profile