RNA id: TU17205


Basic Information

Item Value
RNA id TU17205
length 391
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G13887
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22172550 ~ 22172940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaggtcaaggaggatgaggactgaggagagggaggccgcccgagcacggctgagggagtcagtgacagccaggagagccgtctcagtggagtgagctgtgcggaagccggattgcagaggatcaaggagtgagtgttgggacagaaagtccgagagctgacggtggaccgcccgctcgagagtctttgagaggaaggggagtagggagacagggtggtagttctgaggagaggtggtgtcaagggttggtttcttgagcagtgggatgacagcagcttgtttaattGCCGTTATTTGTCCCTTagtgatatactttgcttttccaggtgtaagtatatataacgcacacatcattaatcaatgtgacaaccaaatgaaacagcaaataaac

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17202 lncRNA downstream 30365 22141953 ~ 22142185 (-) True G13884
TU17179 lncRNA downstream 386834 21785244 ~ 21785716 (-) True G13861
TU17178 lncRNA downstream 390254 21782064 ~ 21782296 (-) True G13860
TU17121 lncRNA downstream 1264432 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 1410857 20761423 ~ 20761693 (-) True G13812
TU17211 lncRNA upstream 16976 22189916 ~ 22226828 (-) True G13891
TU17214 lncRNA upstream 63231 22236171 ~ 22236399 (-) True G13893
TU17216 lncRNA upstream 187574 22360514 ~ 22360776 (-) True G13895
TU17218 lncRNA upstream 199025 22371965 ~ 22372310 (-) True G13897
TU17228 lncRNA upstream 275976 22448916 ~ 22449325 (-) True G13907
AMCG00016497 mRNA downstream 87208 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 151819 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 220357 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 250911 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 462861 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 1668122 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1691641 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1720483 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 1744003 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 1754951 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 2037003 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 3067169 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5311371 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1282152 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1526209 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2138097 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2138097 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2708208 24881148 ~ 24882098 (-) True G14305

Expression Profile