RNA id: TU17211


Basic Information

Item Value
RNA id TU17211
length 208
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G13891
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22189916 ~ 22226828 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagctccctccacagattttctatgggattaaggtctggagactggctaggccactcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgatggtacatggccccgtccatcgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17205 lncRNA downstream 16976 22172550 ~ 22172940 (-) True G13887
TU17202 lncRNA downstream 47731 22141953 ~ 22142185 (-) True G13884
TU17179 lncRNA downstream 404200 21785244 ~ 21785716 (-) True G13861
TU17178 lncRNA downstream 407620 21782064 ~ 21782296 (-) True G13860
TU17121 lncRNA downstream 1281798 20907918 ~ 20908118 (-) True G13819
TU17214 lncRNA upstream 9343 22236171 ~ 22236399 (-) True G13893
TU17216 lncRNA upstream 133686 22360514 ~ 22360776 (-) True G13895
TU17218 lncRNA upstream 145137 22371965 ~ 22372310 (-) True G13897
TU17228 lncRNA upstream 222088 22448916 ~ 22449325 (-) True G13907
TU17231 lncRNA upstream 275678 22502506 ~ 22502708 (-) True G13910
AMCG00016497 mRNA downstream 104574 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 169185 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 237723 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 268277 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 480227 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 1614234 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1637753 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1666595 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 1690115 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 1701063 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 2054369 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 3084535 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5328737 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1228264 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1472321 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2084209 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2084209 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2654320 24881148 ~ 24882098 (-) True G14305

Expression Profile