RNA id: TU17227



Basic Information


Item Value
RNA id TU17227
length 339
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G13906
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22781317 ~ 22781655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCGATTTAAACCCTTATGAAAAAGTACAGCTTTATACAGCCACCTTACAAAGATATCTGAGTATCGTTAAACAGGGTGCAAAAAGCCAGAGTACTCTAACTTTAATGTTGCCTTCGGAGAAAGAGCAGCTTTCTGAAAGTAGTGCGGTTattgaaacagaagaagaaCACCCTGTAGAGACAGATGTGGTTTTATCAGATGTATTGAAAAGCATGCCTGTAAGaagtcaaagaaatgcaaaatatattctacataaaatgtttaacacacCTCGGGTGACCTCCTGGAATAACCAaggtcaatttatttttaaaggtcgGGTGAATAAAGGATCGcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17235 lncRNA downstream 52 22780863 ~ 22781265 (-) True G13914
TU17233 lncRNA downstream 198573 22582506 ~ 22582744 (-) True G13912
TU17231 lncRNA downstream 278609 22502506 ~ 22502708 (-) True G13910
TU17228 lncRNA downstream 331992 22448916 ~ 22449325 (-) True G13907
TU17218 lncRNA downstream 409007 22371965 ~ 22372310 (-) True G13897
TU17237 lncRNA upstream 51 22781706 ~ 22782492 (-) True G13916
TU17241 lncRNA upstream 19551 22801206 ~ 22845547 (-) True G13920
TU17251 lncRNA upstream 133168 22914823 ~ 22915139 (-) True G13929
TU17252 lncRNA upstream 134820 22916475 ~ 22922191 (-) True G13930
TU17266 lncRNA upstream 310632 23092287 ~ 23093836 (-) True G13942
AMCG00016497 mRNA downstream 695975 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 760586 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 829124 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 859678 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 1071628 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 1059407 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1082926 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1111768 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 1135288 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 1146236 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 2645770 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 3675936 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5920138 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 673437 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 917494 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 1529382 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 1529382 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2099493 24881148 ~ 24882098 (-) True G14305

Expression Profile