RNA id: TU17237


Basic Information

Item Value
RNA id TU17237
length 787
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G13916
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22781706 ~ 22782492 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTAGCGACAATAGCGAAGTGGAGAAaacttttacaaaatatacacaccatAGAAATTTGAGCATCGTCTATCTAGTTTattaaaatttatttatttattttttcaaggtaaaaagAGTCGAACGatcaatttaaatgctaattatattattattttcaaaaatcctAGAGATAAGCTGCAGGTGAACACTTTGGCCCGGCAAATGTACCCCAGACAATCTAAATTCTTTTTGGAATCGTTCGAAGACGCGACTAAAAACCCTTACGGATACTTGCTAGTGGATTTAAAAGCGCAAACTCCCGAAGACTATCGACTCAGAGCGGGTATGCTGCCCCCAGATTGGCCTGTAGTCTACGTgctaaagagaagaaataaaaaatagaatgtcgGCTAGGATAAGAAGAAACCTACCACTTTTAAAGATATTATATGAGGGTAATCCTCGtcagaggaaagctgtgttgTTGGCCGCCCCTTCTGATCTGATAGAAACTTTATGTGAAATCGCCTTAAACGTATATACCCTTATATACCCTTAACAGCTTTTCAACTGGgtgaactaaaacaacaaaagtctgTTATAAAGATCCTCACTAACAAGAAGTTATCCgttaaaaagaagagaaaggtgGTTTTATCTGCCCCCTCTTGAGCATAGCCTTGCCTTTCTTAACCAACCTTCTAGCTTCCAGATCTGTATAGTAGCGATGGAATAcacccaaaaaatgtttttggtaccTCAAGAACAACttgacaaactaacaaaacccCTGCCACCTCCAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17227 lncRNA downstream 51 22781317 ~ 22781655 (-) True G13906
TU17235 lncRNA downstream 441 22780863 ~ 22781265 (-) True G13914
TU17233 lncRNA downstream 198962 22582506 ~ 22582744 (-) True G13912
TU17231 lncRNA downstream 278998 22502506 ~ 22502708 (-) True G13910
TU17228 lncRNA downstream 332381 22448916 ~ 22449325 (-) True G13907
TU17241 lncRNA upstream 18714 22801206 ~ 22845547 (-) True G13920
TU17251 lncRNA upstream 132331 22914823 ~ 22915139 (-) True G13929
TU17252 lncRNA upstream 133983 22916475 ~ 22922191 (-) True G13930
TU17266 lncRNA upstream 309795 23092287 ~ 23093836 (-) True G13942
TU17276 lncRNA upstream 564514 23347006 ~ 23347351 (-) True G13952
AMCG00016497 mRNA downstream 696364 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 760975 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 829513 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 860067 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 1072017 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 1058570 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1082089 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1110931 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 1134451 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 1145399 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 2646159 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 3676325 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5920527 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 672600 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 916657 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 1528545 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 1528545 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2098656 24881148 ~ 24882098 (-) True G14305

Expression Profile