RNA id: TU17276


Basic Information

Item Value
RNA id TU17276
length 346
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G13952
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23347006 ~ 23347351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAAATAGAGTCAACCAAATCATAAAGATAACCAAAACCTCCTATCTGGAACATTGGAACAATGAAACCAAATCCCAAAGTAAACTGGATTGCTATCGGGCCCTAAACAGAGAATACACCCTGGCAGAgtatctcttcactgtcagagatacgaagcagagacggatcctgaccaagtacaggctcagtgaccacagcctggccatagagACAGGCCGaaacaggcagagctggctgcccagagaggagcggcgctgtggtcactgcgagacaggagaggtcgagacagagatgcacttcctcctccactgcaataaatataccaaattaagggacacattcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17266 lncRNA downstream 253170 23092287 ~ 23093836 (-) True G13942
TU17252 lncRNA downstream 424815 22916475 ~ 22922191 (-) True G13930
TU17251 lncRNA downstream 431867 22914823 ~ 22915139 (-) True G13929
TU17241 lncRNA downstream 501459 22801206 ~ 22845547 (-) True G13920
TU17237 lncRNA downstream 564514 22781706 ~ 22782492 (-) True G13916
TU17278 lncRNA upstream 89 23347440 ~ 23347712 (-) True G13954
TU17280 lncRNA upstream 10110 23357461 ~ 23357692 (-) True G13956
TU17281 lncRNA upstream 11020 23358371 ~ 23358814 (-) True G13957
TU17307 lncRNA upstream 493711 23841062 ~ 23844221 (-) False AMCG00016504
TU17321 lncRNA upstream 527163 23874514 ~ 23875167 (-) True AMCG00016505
AMCG00016497 mRNA downstream 1261664 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1326275 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1394813 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 1425367 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 1637317 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 493711 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 517230 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 546072 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 569592 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 580540 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 3211459 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4241625 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 6485827 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 107741 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 351798 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 963686 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 963686 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 1533797 24881148 ~ 24882098 (-) True G14305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000330_01667530_01671493.mRNA False 2258 mRNA 0.41 5 CI01000330 1666258 ~ 1671798 (-)
eurasian perch (Perca fluviatilis) TU255776 True 459 lncRNA 0.50 2 NC_053129.1 31597215 ~ 31597715 (+)