RNA id: TU17277


Basic Information

Item Value
RNA id TU17277
length 286
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G13953
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23347427 ~ 23347712 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACTCAGGGGACTCTTTTCAGGGCTGAGCTCTTGGGTTTGGAGGGCCTTGTACTGGAGTGAGTCTGACTCACTTTTCTTCAGGTGCATCCAGAATTTCAGTgctcttttctttatattaatgaGGGTTGGGAAGCGGCCTAATTCTGCCCTGCATGCGTGGTTTGGTGTGTTCCTCTGCACCTCCAGTATGTTTTTATAGAGTTCAGCATGCAGGGTCTCTATTGGATGTTTGTCCCACCTAGTGTAGTCCTGTTGACTGAGTGGACCCCATACTTCACTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17273 lncRNA upstream 21667 23325560 ~ 23325760 (+) True G13949
TU17267 lncRNA upstream 235262 23111926 ~ 23112165 (+) True G13943
TU17263 lncRNA upstream 336558 23010646 ~ 23010869 (+) True G13939
TU17262 lncRNA upstream 336927 23010117 ~ 23010500 (+) True G13938
TU17250 lncRNA upstream 432371 22914796 ~ 22915056 (+) True G13928
TU17308 lncRNA downstream 514503 23862215 ~ 23865800 (+) True G13979
TU17309 lncRNA downstream 514503 23862215 ~ 23865800 (+) False G13979
TU17327 lncRNA downstream 533195 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA downstream 533248 23880960 ~ 23882946 (+) False AMCG00016502
TU17335 lncRNA downstream 595562 23943274 ~ 23944762 (+) False AMCG00016506
AMCG00016499 mRNA upstream 362770 22978894 ~ 22984657 (+) True AMCG00016499
AMCG00016498 mRNA upstream 680105 22656660 ~ 22667322 (+) True AMCG00016498
AMCG00016496 mRNA upstream 1020404 22326799 ~ 22327023 (+) True AMCG00016496
AMCG00016494 mRNA upstream 1190157 22146673 ~ 22157270 (+) True AMCG00016494
AMCG00016491 mRNA upstream 1291198 22045365 ~ 22056229 (+) True AMCG00016491
AMCG00016501 mRNA downstream 305682 23653394 ~ 23716846 (+) True AMCG00016501
AMCG00016500 mRNA downstream 381136 23728848 ~ 23751132 (+) True AMCG00016500
AMCG00016503 mRNA downstream 420424 23768136 ~ 23815510 (+) True AMCG00016503
AMCG00016502 mRNA downstream 518555 23866267 ~ 23881166 (+) False AMCG00016502
AMCG00016509 mRNA downstream 556292 23904004 ~ 23913433 (+) True AMCG00016509
TU16114 other upstream 6225495 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 6861424 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 6861424 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 6862279 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 8908821 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 732305 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 1187306 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 1660250 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1785486 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1802771 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile