RNA id: TU17287


Basic Information

Item Value
RNA id TU17287
length 698
RNA type TUCP
GC content 0.30
exon number 2
gene id G13962
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23455092 ~ 23455811 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atctatattaatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaaataggtggctcagcagatacaatcttggcagcacaggctattcagagggacttagataatattcagttgtgggctgacacctggcaaatgaaattcaatgtggacaagtgcaaggtaatacatgcaggtaacaaaaatgtccactataattacactatgggaggtacagatctagatgaagtaacgcgtgagaaagaccactttctccatccaagcaatgtggggaagcaataaaaaaggcaaacagaatgctagagtatattgtgaaaagtgtagaatttaaaacaaggaaagtaatgttaagactgtacaatgcgctagttagacctcatctggaatactgtgtacagttctgggcaccacacttcaagaaggatattgctgctttagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactcggagagactgagggaactgaaccttttcaccctggaacagaggagacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaaaacggaaaacaggagacacttcttcacacagagtagtcacaatctggaataaactacccagcgatgtggttgaagctgaaagtttgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17281 lncRNA downstream 96278 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 97400 23357461 ~ 23357692 (-) True G13956
TU17278 lncRNA downstream 107380 23347440 ~ 23347712 (-) True G13954
TU17276 lncRNA downstream 107741 23347006 ~ 23347351 (-) True G13952
TU17266 lncRNA downstream 361256 23092287 ~ 23093836 (-) True G13942
TU17307 lncRNA upstream 385251 23841062 ~ 23844221 (-) False AMCG00016504
TU17321 lncRNA upstream 418703 23874514 ~ 23875167 (-) True AMCG00016505
TU17328 lncRNA upstream 425148 23880959 ~ 23882959 (-) True G13990
TU17356 lncRNA upstream 477198 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 478355 23934166 ~ 23934467 (-) True G14013
AMCG00016497 mRNA downstream 1369750 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1434361 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1502899 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 1533453 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 1745403 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 385251 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 408770 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 437612 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 461132 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 472080 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 3319545 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4349711 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 6593913 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 6593913 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 6593913 16858541 ~ 16861179 (-) False G12945
TU17295 other upstream 243338 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 855226 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 855226 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 1425337 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1555530 25011341 ~ 25011778 (-) False AMCG00016562

Expression Profile