RNA id: TU17295


Basic Information

Item Value
RNA id TU17295
length 736
RNA type TUCP
GC content 0.39
exon number 2
gene id G13969
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23699149 ~ 23700255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaagagcgaggtctacctctccagagcatggcctgtcggccggggcccgccgaccgttttccctgtgaagccgtccatcaaggttctggggatcacgatcgacgggaccaacatgggcacccggagctgggaggaggcTTTATCTAAAGTCCAAAgaaagatccacggctggagcacaaggaccttgacgatggccggtaaggtgctggtcgtaaaggccatcctcttcccgatactcCTCTACGTAGGaatgatcttccccccagacaaggtcgtcgcaaaactagtgaccaggattatatttcggtttgtctgggggagcaaaatggagaggctgaaaagagtgcacgtttgcctcacaaatacgcagaaagatgtctcctggatggctgtgagtcggtgtctccccacccgagtgttcatgcacagaaggggcctagccccttatgacatctgcccctacaagggttgcctggggaaggagacggaggctcatatctttagggattgcccctctgcctacagggtctggctcctgttttctccgttcctccacaggtttgccgttcctgtgcgggcgaccgcccagcagatcttACATGGTCCAGCCAGGGGATTAACATCTtccaccctgaggtgctggtggcgtgtcgtctgcgcagtgaaacaggccctgtgggagggacggaacatctgtctattcaataagcaggagctggacccaattgtcatcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17281 lncRNA downstream 340335 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 341457 23357461 ~ 23357692 (-) True G13956
TU17278 lncRNA downstream 351437 23347440 ~ 23347712 (-) True G13954
TU17276 lncRNA downstream 351798 23347006 ~ 23347351 (-) True G13952
TU17266 lncRNA downstream 605313 23092287 ~ 23093836 (-) True G13942
TU17307 lncRNA upstream 140807 23841062 ~ 23844221 (-) False AMCG00016504
TU17321 lncRNA upstream 174259 23874514 ~ 23875167 (-) True AMCG00016505
TU17328 lncRNA upstream 180704 23880959 ~ 23882959 (-) True G13990
TU17356 lncRNA upstream 232754 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 233911 23934166 ~ 23934467 (-) True G14013
AMCG00016497 mRNA downstream 1613807 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1678418 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1746956 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 1777510 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 1989460 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016504 mRNA upstream 140807 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 164326 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 193168 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 216688 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 227636 23927891 ~ 23931580 (-) True AMCG00016514
TU17287 other downstream 243338 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3563602 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4593768 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 6837970 16858541 ~ 16861179 (-) True G12945
TU17551 other upstream 610782 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 610782 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 1180893 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1311086 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1312109 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile