RNA id: TU17308


Basic Information

Item Value
RNA id TU17308
length 2852
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G13979
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23862215 ~ 23865800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTTCCAGTGCACTAATACTGGGCACATTCACACAGCTCGAACCCCGACCCTTTTATTACAATTACCTATTGCACAGATCTTGTTCTCTGCCACCCAGACTCCCGTGTCCGGCGACGTGGAGGCCTTGATCCCAAACCTGCCACACAGCTTGATGACCGTCCTCTCCAGCTCGCACACGTACCAGCGGACGCTCTTCTTGAAGCAGCCCAGGTGGAGGACGGGGTAGCACACCAGCTGCCCGGGCCCGTGGAAGGTCACCAGTCCGCCGCGGTTGGTCCGGAAGAACTCGGCGCCGAGCCGCCTGAGCCTCCGCTCCTCCTCGGCGGGGTAGGTAGCCTGCCGGAGGCCGACAGTGTAGACGGGAGGGTGCTCACACAGCAGCAGGGTGTTCGGGGCCTGTCCCAGGGGCCGGGAGAGGGAGTCCAGCTGCTGACGGACATACTGCTGCTGTACCTGCAAGGAGTTTGCATAGGAGATCCGTCCCAAATTCACCACCTGCACGGATGCCCTGGCCGGGGTCATTATTGTTAGTTTTAGTAATTTAGTAGTTTATAGTTTTGAAAGAGTATACCTTTGTCTTTTGTGAAGgtggttttatatttttcacatattcTAGAATACTAGTTTCAACAATCTGAACATTGCTGGTTCGAGTGTCGAGgcttacaatatatattatgtagCAGTACACTTCAGGGGCTCCCTGCCCGTTTCAGCAGCGGGGGGGAAATATACAGACTGCAGTCCGTCTCGGAGAAGCGAGTGTGCACATGTGTCCGTCCCTGGTTATGAGAGCTGCGCTTCGGCCTGCCATCGTAGAAGCTGCCCACCGTGGTAATCCTGTGGTACAGGATAATAAGCAGAAAGGACGCGGCCCCAACACTGTTCACAAACCGCATCAGTTCTGCATCTTCCGACATCATCCAGACCTGGAAAACAAAGGGCTGTGTTACACCTGGGTGACGGCTGCGTTTTAGATCATGGGAACTAATATAATGTATCGGAGATCTCATTTGTGTCCAGCGACCCGTTAATGTACACACGAACCACCTTGTGTCAATTCAAAACACAGGGTTACTGCCGTGTGTTTATACTCCAGCttgatgtgtatttaaaacGCAGTAGATTAGGGTATTCATCTTTTCAATATGTTGAATGAAACGAACACTATACTTTAAAAAGGGACATTCAATCTCACCAGTTTGTTTCGATTCCCCCTACTTTAAGGGCGCAGCCATATTTACAAACTCAACTTTATTGACAACACGACGCACACGTTCAAATAACGTGTGGTCTGCATTGCAGCCTCAATGCACCctttttatgcattattttatttttgtatgttataTGCGATCGCCTGCTGCTCTAAAACCATTCACAGATTCATATCAAGTAAGCGAAAATTAACATTGAATAGTTTAGTTATACAAGTTTGCTGTCTGTGCAAAACGATTTTGTAATGCAGACAATTGGTCTGTGTCCCCTGGAGATTGGAAACGTTCAGGCGATGTACATacgtttgtttaaaaaaaaaaagaaaagaaaaaaaagcatattcaCATCCACATTATCAACAGATTTCCACCaacatggaaaaagaaaaaaaacacgagTTTGTCATTAAGGGAAATGTATTCTCTAAACACTGGCTATTCTGTTCAGTAAGAGCCAGTGTCCCATGATATTAAAAACTACTGCCATGAATGTGCCCAGGACTGAGGCCGTCACTGTCTGCAAGAAGAGTAATTTAATTAGTCAAAGTGATGCATTCGTCTCTAAATGAcgggacatttttgttttacattgcttAACCTTTATaactaaattactttaaataagtTTACTCCTGTGGggaaaaaacttttaaaagaaGGTACAGCTTTGAAAGAAATCAGTCTCTACAGTTGTCAACGAAGCAGATCGTCCAGTTCAGACCAACATGAACCGCCAGCGCGTCGTGCTGTTTCTCCTGCTGGCTTTCATAGCCTTAACATGCCAGGTCCAGGGAGCGGTCGGGTTCCCCTGGGGCTGTTCCAACTACAGCGGTACCTGCCGCCCCACCTGCCTGCCCCAGGAGCTTCCCTTCGGGCCCTTCGGCTGTGCTAAAGGATTTGTatgCTGTGTGTCTCATATCCTATGAAGACCGAGAGCCTTGTGATTTCAATGTGCTTTTTATTACTGTCAACTTCAGTCTCTCATGTGACTCTAAGTTTTAAACATGGCACTTGCTGTCTCTTCTGCTGTTCTTAACCCACTTTTagcccctctctgtccctcacattattatttttttgcagtacAGTCCTTTGGCATTTTAAGTTAATAGTCTCtacaaatcctttttttaaGGCATCAGAGATCACAACCAGCTTCTGCTAGCCATGTCAACACAACCCGAAGCAGCAGGATTTTAATTTGGCATTTAACTGAGTTCTATCTACCATCGGGCTCCTAGCTTACCTGGATAGTCAGCCTCTTTCTGTTTCATGCAGAGAAGCATTCTTAAAGAACCATTTCAGTATAGGGCTCTCAATTGGAAACCTTGCAATAAGTCTGCACACAAGATAAAATCTCTTCTATGGGCCATAGCACATTTATCTTGAaatttaaggttttattttttgttttacagtgcaTAATCTTACTTGTTTTCACTTATTAATTCTCAGacaaaatcagaaaaaagtattttttgttctAAAACTCTATGCTTTTATGGATGAAAACTCATCCACATCGTTGTTTTAGTGTGTGACAACACCTACATTTTCTtgatatattgttattttgaataatgtatgcTATAGTATTATTCTgtattgcattaaaatatatattccaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17277 lncRNA upstream 514503 23347427 ~ 23347712 (+) True G13953
TU17273 lncRNA upstream 536455 23325560 ~ 23325760 (+) True G13949
TU17267 lncRNA upstream 750050 23111926 ~ 23112165 (+) True G13943
TU17263 lncRNA upstream 851346 23010646 ~ 23010869 (+) True G13939
TU17262 lncRNA upstream 851715 23010117 ~ 23010500 (+) True G13938
TU17327 lncRNA downstream 15107 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA downstream 15160 23880960 ~ 23882946 (+) False AMCG00016502
TU17335 lncRNA downstream 77474 23943274 ~ 23944762 (+) False AMCG00016506
TU17414 lncRNA downstream 214217 24080017 ~ 24103017 (+) True G14057
TU17505 lncRNA downstream 452000 24317800 ~ 24321319 (+) True G14132
AMCG00016503 mRNA upstream 46705 23768136 ~ 23815510 (+) True AMCG00016503
AMCG00016500 mRNA upstream 111083 23728848 ~ 23751132 (+) True AMCG00016500
AMCG00016501 mRNA upstream 145369 23653394 ~ 23716846 (+) True AMCG00016501
AMCG00016499 mRNA upstream 877558 22978894 ~ 22984657 (+) True AMCG00016499
AMCG00016498 mRNA upstream 1194893 22656660 ~ 22667322 (+) True AMCG00016498
AMCG00016502 mRNA downstream 467 23866267 ~ 23881166 (+) False AMCG00016502
AMCG00016509 mRNA downstream 38204 23904004 ~ 23913433 (+) True AMCG00016509
AMCG00016507 mRNA downstream 59991 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016506 mRNA downstream 72251 23938051 ~ 23945024 (+) True AMCG00016506
AMCG00016508 mRNA downstream 93504 23959304 ~ 23972841 (+) True AMCG00016508
TU16114 other upstream 6740283 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7376212 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7376212 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7377067 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9423609 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 214217 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 669218 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 1142162 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1267398 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1284683 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile