RNA id: TU17328


Basic Information

Item Value
RNA id TU17328
length 2001
lncRNA type intronic
GC content 0.40
exon number 1
gene id G13990
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23880959 ~ 23882959 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATGTGttgagaatatttattttatttctcacattttgagctataaaagaaaaaaaaaaaagggaagcgAGAAGTCACAGCTGTATTTGGAAGCGTTGGAGAAGAGAATTCTCTGAGAATTCTGGTAAATCCATAATGCAAACAGTACTGCACCCGCCACCCCCTAATAAGACTGGAATCATTTCCAACCACTCCTCATAAAAGTAGGTACCTTAAGACCTTGATTAGAAAGTCCTGCtgggaaacaaagaaaaccacCCCAAACCAAAAACATCACCGCAATTTATTCCTGTAAAGAGTGGAAAGAGCTCCGTGGACTTCCATGCTGGCAGTCTTTAactcacatatatatacacaatacaaaaaaaaaaaatgtaaacttcaAACACGTAATTGACATACAAATCACAGAATCTGTCCACACCTCCTCAAACCCACGCTCCCatccacaaacaaaaaacagattctCACAGCAGAGGCAAGAGGGGGTTTGGGCAATCAAAATGGTCTGCTTACAATGTGTTACAAATTTGACTTATGTGATGCTCTTTACAACTATtcttcaaaacaatgtgctttttttccttctcgCTTCGCTTTTAACACCCTTTATGTGCCAGATCTCACAGCTTGTCATTTGATGGAAGAACACAAGACCAGGCTCTTTTTAGTGGAGACAGCAGAAGTACACATACAGTAATTTGCCTTATTAAATTTgtttatgattaatttattttactggcAAAGCAAGtcactaattaaaaacacagtccCCACTAtctgaacaaaacatttaaaagggaaaCTACCATGTTTTGGGAAACACATTCTTCCTGGCAGAGTAACAACTGTAAGGGGGTATTCATAATTGATACCTGTCTCACTACACAGGATCATTATCAACAATTGGCCTTGCTGCAGTAAAGGATACCTGAAAATACTCAGTTTtagttaaaaacacattttaccaGTTTCATCCTCGGTTGAGTGATGCAAGTGCTCTGATATAGGCCATAACTTGTGGTCTTGATGTTATCTCCCGTTCACTGGGTCGTTCACCTACTTAACATTGTCAAGGGACTTGTCTGAAAGTTATGgcagaatgaagaaaaatggGCAATTTGCATACACTATTTAGCAATGCCACCTAAGTCTATACGCAGTTCAAAATCCAAATAAGGGTCCCAGTTCAAATTTAGTTTAGCTGAGCGATTTCAGAATTCTTCTATAATTAGAATACAATcccatttttcctttttaaggaTAAACAAAGACTCTGAACTTAGACTATTTGCACAATTCCACTTGCTCTTTGAAAGAAGTTCACTTAATATATCACAAAACTCATAACTGATTTAATATGTGTGTTCACATCAAGAGTGCAGGCCAACATTATGCAAAACAAGAAGTGCTGCTGTTCCCTATCTGTGTAGTttcaccaaaaataaacaaacacctttacaatttgccaaaaaaaaaaaaatcccaaataaGAAGTTAATTGGGAACCGCTTGGGGGAGagcacagaataaacacaaaatacacaggaCAGACAAGTATCCCATCGGAGCCTCAGTGCATCTTCACCACACATCAGGATTTGTCCTTTCCATGAACAAAGGGTATGCCAGCTCAAACGGTTACATCCACCGTCAAACACCACAGCTGTGTAAATGTTCTAGGAGAGACCCTTGTAGGAGGGTCCAGCCGAGGAAGAAATGGAGCCAAGTCACCATTAGTTCAATGCTTGTTCACAGAGGTAACAGGTGAGGATTTGGCATTTCCCCCAGCTACTTCTTCTGGAAGAATCCCATGATGGACACCTGCTTGATCACTTTGTTGCTGGCAGCGGCAGACTTCTTTTGgctcttcttctcctcctctttcttgCCTGTGGCTGGCTTCAGGCAGGCGAGCTGCTTGGGGGGCTGCTTGCTGGACTTCAAATCATCCTCACTCTCTGAGAAGGACTCGCTCTCAAACCTCTTCTCTGTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17321 lncRNA downstream 5792 23874514 ~ 23875167 (-) True AMCG00016505
TU17307 lncRNA downstream 36738 23841062 ~ 23844221 (-) False AMCG00016504
TU17281 lncRNA downstream 522145 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 523267 23357461 ~ 23357692 (-) True G13956
TU17278 lncRNA downstream 533247 23347440 ~ 23347712 (-) True G13954
TU17356 lncRNA upstream 50050 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 51207 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 58359 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 59085 23942044 ~ 23943378 (-) True G14016
TU17453 lncRNA upstream 264440 24147399 ~ 24147677 (-) True G14092
AMCG00016504 mRNA downstream 18220 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016497 mRNA downstream 1795617 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1860228 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1928766 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 1959320 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016512 mRNA upstream 10464 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 33984 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 44932 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016513 mRNA upstream 51944 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016511 mRNA upstream 62235 23945194 ~ 23951329 (-) True AMCG00016511
TU17295 other downstream 180704 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 425148 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3745412 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4775578 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7019780 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 428078 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 428078 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 998189 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1128382 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1129405 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile