RNA id: TU17356


Basic Information

Item Value
RNA id TU17356
length 435
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G14012
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23933009 ~ 23933843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAGACTTCTGTCATTGACCACTTCTTCCACATTTAATTCAGACTGCATGAGCTTCagctgaaatacacacacacacactTGGTCTGCTCTTTCCTGAGTTCCTTAATTAGTGTCAGGTTGTCTATGTCCTTCGCCCTTTCCTCCCGCAGCTGGCTGACCACGCTGGAGGTCTGGGCTATACAGGTTTTAATGGCTCTGTCTCTGCTGAGGTGGGCTTCCAGCAACTGTAAAGAAAAAGTCACAATAATTGCACAAGGTGTAACAGTGATGATCCATTTTATCACATGCTGTAATAGCACCTCTGTGCCATACCAGGCTGCAATTCAATCCTGTAGATTATTCGTCATATATTTACAGACAGAACACCTACCAGGGCAGCTCCAGTCCTCGAGGGCCTGGGGGtatctggttttcattctacCTCAGGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17328 lncRNA downstream 50050 23880959 ~ 23882959 (-) True G13990
TU17321 lncRNA downstream 57842 23874514 ~ 23875167 (-) True AMCG00016505
TU17307 lncRNA downstream 88788 23841062 ~ 23844221 (-) False AMCG00016504
TU17281 lncRNA downstream 574195 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 575317 23357461 ~ 23357692 (-) True G13956
TU17358 lncRNA upstream 323 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 7475 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 8201 23942044 ~ 23943378 (-) True G14016
TU17453 lncRNA upstream 213556 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 231314 24165157 ~ 24165420 (-) True G14093
AMCG00016514 mRNA downstream 1429 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016510 mRNA downstream 7293 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016512 mRNA downstream 30204 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016505 mRNA downstream 47751 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016504 mRNA downstream 70270 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016513 mRNA upstream 1060 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016511 mRNA upstream 11351 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016518 mRNA upstream 74045 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016517 mRNA upstream 95547 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016523 mRNA upstream 113977 24047820 ~ 24062602 (-) True AMCG00016523
TU17295 other downstream 232754 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 477198 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3797462 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4827628 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7071830 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 377194 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 377194 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 947305 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1077498 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1078521 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile