RNA id: TU17361


Basic Information

Item Value
RNA id TU17361
length 1335
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G14016
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23942044 ~ 23943378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattaggtttttatttgtaagcaatgatgtaaatgtatttctccaGCAGCCGCCGCAGCTCCACACAGCGGATGACTCGCACAGGCTGTGAAGCGGCCTCTCCAGTTACAATGGCATTAGTAAAACTCGCctttaaaaaagattttaatGATCTGTTAGTTGCAAGTTTTAAATCATACTTTTGTTGCTACTGCTGTTGCATGTTTTGACTGCTTGACTTCTCACTCTGGATATGAGAAGAGCGGGTTATAAATAAAACGTATTATaggatgattattattattattattattattattattattgtagttgcTGAGATACAGAAACAGTGACGTAGCTTGCGATATGCACACCAGTGCGAAAAGCAGGCTGTGTACCTAGTGCTGGGGCAGAAGCAGACTGATGAACATGTATTGGGAAATGGAGtgaacaattaagattgatttattaataaactGTACAGCACTTTAGCACAGTATCATTTTGTGGAAGTTGTGTCATTGCCTCTTTCACTGTATCTGTAGAGCCACGGTGAGATACGAGCTGCTGTAATAGACTGACCGCAGCGCTGCTCAATACCAGATCACACCTCGCAATTTCACAATGCTCCTGCAGCTTCTCCTCTTCATCACATCATCTTTGCAGGTCTGACTTCTACTCTCTAGCTCGTACAAGAACTTGCTCAGCTGACCGCAGGGTGTGGTCATATGTAAGCGGTTTTCATGACACGAAATAGACATTTCACCACGTCTTCCCTTTTTCCCCTAATCGTCccgtttaattaaatacagcgTTGAGCTTTATTTCACTTGTTGATGTCCTCAGTAAGTGTGGGGCAGATTCCACCCTGTGCAAAGACCCTTCCCGTCGCTCATGTCATGGTTGCGAGGGCAAAGGGTGAAGAGATTCTTTGAGATACAAGAACTTCCCAAAAGAAGtgaaaaaaagctaatttgttgACAGCAAATTTCACAATTAGGCATATATGCAAAATCAAACAGTAGCAGCATTAGTCTCCTCTGCAGAATAATTAGTTTACAATAATTGAGAAGCTCTCTACTACACAGTATACTGTATAGATAGAATCTGTAATACCAAGGGcctctatttttaatttgttagatCAGTtaggtatttttatttcaacatcaaTAGTGAGTGTCCTCTGACATTTACTCTGGATGCCCTCTTGATTGGTAGAATTGAGAGTCAACAGTGGCAGCTCCTGCAGTGGATACAGCCCCCGCTCCTCACTGTGCCCCAGGGGAGCTGCAGTCTGCCCTCAGTTGTCCTGGCGTTGAGACCACTCGCTGTACCCCCCTGCGTAGTGATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17360 lncRNA downstream 506 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 7577 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 8201 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 59085 23880959 ~ 23882959 (-) True G13990
TU17321 lncRNA downstream 66877 23874514 ~ 23875167 (-) True AMCG00016505
TU17453 lncRNA upstream 204021 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 221779 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 392566 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 481786 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 610314 24553692 ~ 24566678 (-) True AMCG00016538
AMCG00016513 mRNA downstream 4810 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016514 mRNA downstream 10464 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016510 mRNA downstream 16328 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016512 mRNA downstream 39239 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016505 mRNA downstream 56786 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016511 mRNA upstream 1816 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016518 mRNA upstream 64510 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016517 mRNA upstream 86012 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016523 mRNA upstream 104442 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016524 mRNA upstream 119889 24063267 ~ 24068003 (-) True AMCG00016524
TU17295 other downstream 241789 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 486233 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3806497 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4836663 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7080865 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 367659 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 367659 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 937770 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1067963 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1068986 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile