RNA id: TU17415



Basic Information


Item Value
RNA id TU17415
length 1125
RNA type TUCP
GC content 0.45
exon number 2
gene id G14057
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24080017 ~ 24110182 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aacaaacacagcagctcACTCATTGGAATCATTTTTCAACAGTTTATTCTTTGGGACTGAAACAATTTATCACATGGATACCACTGGAATATGACATGAACATGTGCACGGCCCTgtgcacccacacacacagcaaacacgAGTGACtaaagagaggaagaaaatcagaaaaacaaccaacaaaatacttaaaattaaaaaaaaacatcaacaccTGAAATACAGAACCACAGTCAGGCTTCAGCCACCTGCctgcaataaatacagaacTGTTTCATCCCTTGCTTTCAAACTCCACACTTCCTAGTTTAGAAGTctgattttcttcttttaaatataattatttcttttgtttgtagGGAACATTAACAACAAGTACATCcatttgtattggttttctttttttgtgtatttttttaaacattttatttaggtCTACAGCTACAGCTATGAGATGAaatgagatgagatgagatgagatgGCTACCTGGTAGAAAGGGAAACGGGTGGAAATGTCttgagtggggtgggggtggcaggGGATCAGTGGGCCCTCTGTTTTGCAATGCAGGGGTTTGGGTGAGCAGAGGCTTCCCTGTGCTGAAAGACTGAGTGAAATGCCTGGGCTGCTGAGTGGACAGGGGTTGGAGAGATGGCGTGTGTTGGGAGGGGGGTCTACATGTCGCTGGAGCTCACGAAAGCACAGGAGCAACAGACCACCTCTGCAGTCCAGTCAGCCGTGCCCTAGTCAGATCGGTCTAGATTGTATTGTCATGTGTCTCAACTGGCCACTGTTCCCAACCCCACTCCCTCCCCAACAATCCCCCCTGCCTTTTGTGCAGCTGAATCAGACTTGTATATCAGCTGCTAACATGAAACATCCATTCAGTCTGATTCACAGTTTGGCTCTCAGTTACATCCCAGCCTTCCAGGCTAACCTGCAGTACAGCAGCCCACCTCCCCATTAGGCAGGGAACAGTGCCCAACACCCCCGACGGCAGGGCCACAGGGAACCGAAACCTGAACcgcgctgctgctgccgccTCAACTTCTCCGTCTCTACTCTGCTGGTggcatttctaaaaaaaaaatatatatatatatatatatatatatatatatatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17335 lncRNA upstream 135255 23943274 ~ 23944762 (+) False AMCG00016506
TU17327 lncRNA upstream 197071 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA upstream 197071 23880960 ~ 23882946 (+) False AMCG00016502
TU17308 lncRNA upstream 214217 23862215 ~ 23865800 (+) True G13979
TU17309 lncRNA upstream 214217 23862215 ~ 23865800 (+) False G13979
TU17505 lncRNA downstream 207618 24317800 ~ 24321319 (+) True G14132
TU17511 lncRNA downstream 226788 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 260144 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA downstream 260144 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA downstream 260144 24370326 ~ 24375031 (+) False G14127
AMCG00016515 mRNA upstream 2731 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016516 mRNA upstream 50061 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016508 mRNA upstream 107176 23959304 ~ 23972841 (+) True AMCG00016508
AMCG00016506 mRNA upstream 134993 23938051 ~ 23945024 (+) True AMCG00016506
AMCG00016507 mRNA upstream 145567 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016529 mRNA downstream 214768 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016537 mRNA downstream 369524 24479706 ~ 24542799 (+) True AMCG00016537
AMCG00016536 mRNA downstream 458946 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016541 mRNA downstream 471795 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016542 mRNA downstream 491518 24601700 ~ 24617531 (+) True AMCG00016542
TU16114 other upstream 6958085 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7594014 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7594014 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7594869 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9641411 14437771 ~ 14438606 (+) True G12587
TU17581 other downstream 424836 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 897780 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1023016 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1040301 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 1040301 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile