RNA id: TU17454


Basic Information

Item Value
RNA id TU17454
length 264
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G14093
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24165157 ~ 24165420 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGGGTCCTCCTGTTCCGACCCCTCCTCCCGTCCGGGGCGGAGGAGGAGCcgcggagggagggagggcccGGGACGAGCCGCGGAGGGAGGGTGGCGTTAGGAGCCACTCATCCAGAAGAGCCTCTCGCGTAGAGGAGCCGCGGAGCCGCACAAGATGTCTGAGTAGCGGCGCGGCAGCACGGCCCCACTGCACCGAGCCTGGGATTAACAGCGCACGACACCGGAGCTCTTTTGAACCCTTTACCCCGACCTACCATTTTCG

Function

GO: NA

KEGG:

id description
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17453 lncRNA downstream 17480 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 221779 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 223619 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 230690 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 231314 23933009 ~ 23933843 (-) True G14012
TU17560 lncRNA upstream 170524 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 259744 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 388272 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 388272 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 436278 24601698 ~ 24602007 (-) True G14213
AMCG00016522 mRNA downstream 23543 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016521 mRNA downstream 72557 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016524 mRNA downstream 97154 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016523 mRNA downstream 102555 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016517 mRNA downstream 125357 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016525 mRNA upstream 32465 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016526 mRNA upstream 50527 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016528 mRNA upstream 81762 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016527 mRNA upstream 84697 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016533 mRNA upstream 125274 24290694 ~ 24304314 (-) True AMCG00016533
TU17295 other downstream 464902 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 709346 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4029610 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5059776 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7303978 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 145617 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 145617 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 715728 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 845921 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 846944 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile