RNA id: TU17499


Basic Information

Item Value
RNA id TU17499
length 2808
lncRNA type inter_gene
GC content 0.42
exon number 6
gene id G14127
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24370326 ~ 24375827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTCCAAAAACAAGGACTTGAAATTCAATCATCccagtttgcattttattataaactcATATCATTTAATGAtttgacagtttatttttcattaatccctttaagaaaaaacaaatgctgcttAAGAAAAGATTTCACATTGAATATAGGTATTAATTTACTGAAGTACAACTGACAAGACAATCAACACAGTCTACACTTCTGATCACACGAGCAAGCTGGCCACTGAGCGTTACACATCATTCGACAGGATGGCCAGTTAGGCAGGAGCCCTTTGTACAAGTCAAAGACAAGAGACGAGACAACTGAGTGACACTGAACAAGAATACGACGGGGGCTTTCAAACACAAGAGACATTACAAACCACTGGTATAGGATTTAGATCTGGATTCAGATGCATGAAATGTGAACACAGGAGTACAGCCAATACGAATCTCCCTCCCCGCCCACCTGGCCAGGCCACTGGGGTTCACAAGCAGCCGAAATCTTGAAGACCAGAGTTGGAGGAACACAGAGCAGGTGCTGGCAAAGATCAGTCCACGCGGGGGGGAGGAggttctggttttcattccacctcagGTTTTACTTAATTGATTGGAGTCATTATATAGAAGGAAGTCAAATCACCCCTCTTCCTGCCGGTCTGAACAAGGGGCTAATGGAAAGGCGCCACTAAAACCTGAAGGGATCCGAGCGACGGGTGCTCTGCAGCTCCCTAAACTACAGCTCTGGTCTTTAAGATTCGCTCCTCTTTACATTACAAGGAACTCGGCAGATGGCAGACAAACGCAATCCACTACAGCTtgaaaaaacgaaacaaaagcaaacacaaataacatgttcgaactgaaaatgtgttttacaactGAGAATTACAAAAATAGAGCTCAGGGTCTGAATTCTGTTTCCTTTTTGTCGTTACAGCAAAATATTTCTCAGACTGTAGAAACTGTAAATACAACTGCGTGCGAGAAAATAAGGGTCTCTAAATTCATCAAGACCAAAGTGATTTTATTCTGAGACAGCACCACCTAGTGGTCCTCTccaattatgcatttattaggTATTTAGTTCCAAGTTAAACTGGAGAAAGAAGTCAAAACTGCACAGAagtgatttaacaaaatgtacttgGCACATTCTTCTCCCAGAAAAAGCATCCCAGCcatgaaaaaacacagatgttcaAAGTTTGcacttaaaaactaaaataaacttctAGCTGAAAAATCAAAATAGTTACATCTTCAAATTTTAAAGCCCCACATGATTTCCCATCTCaatctttccatttattttctgttctctgCTAAATAACTTttccctttaaaacaaatgtgtgtgtgtaggcggGGGAGGTGGAGGACAAGACGAAAAAGCtagatatttaaatcaaaatcaaattaaataacagaccTGCTGCCCTACATATCAATGTGAGAGGCTCTCTGAAAGGTTGAAGCAAACTATCAAAAAAATTACATATCCTTTATGGGCGACCGAAAAAACGGCAAAAAAATCTTTTATCTGCCCGTGAAATAAACTAatgagtaataaaaaaaaaaatagacagatTGCAAAGAGGAAGCGAAAAAGGGTTTAACTTTTTATTGTAAATTCAGATACTATGTATTTTGACGATAAATTCCACCTctagtgaaataaaatataaatacattaaaacaaaactgaatactttgtttattattttgtctgtttgtccGTTTGTCCGCGTTGACGTCACCGCTCCCACTGACGGGTCTCCTACAGAGCCAGCGTGTCaaagcaaggaaaacaaaacctggCATGGGCTGTTTGGGTTGAGATGACTCCTCTTCCAGAGCAGGGGCTCTGCAGCTCGTGGAGAGAATGTCATCGAAAGTCCATACTTAGATATCATCAATGTCTTCATCGTCATCTCCGATGTCATCGAACTGAATCTCGTCGTCATCTCCAGGGCCGAATGTGTCCGTCTCATTGATTTTAGCGTGCTCTGGCAGCTCTCCGTAGGCTTTTAAGCTCCTGGCTTCATCAGCGTTGTACTTGAGAATGACATCAGCCTTGTTATCCTGATAGTCCCTCAATCCCACCAGTATGATGTCCGAGGTGTTTATCCAAACCTTTTTCCTCAGCTTGCCCCGGATGTGACAGAGCCTCTTCACTCCGTCAAAACACATGGCTTCCAAACGCCCGTTCCCAAGCATCTTGATGACCTGGGCGTATTCCTGGCCGTCCTCCTTGAACACCAGTTCTCTCTTCTCAGACTCGTTCTCATTCTTACCACGTCGTCGATTCTTACCTCCCTTACCTGTGCAAAggggtgggggaaaaaatacatcaagTTAAGTTAGCTTTCCTGGATGCCACTTGCGAGCATCTGATGCTCTGGCATTTAAAAGCATAACTGATGTCCATCTGTGTTCATACACCTCTTGACTGATTACCATTAATTAAACCCTCATGCAGAATTACTTTGATGGGGTACAAAAGGAGATCAAGAGGTGGGTACAGTCATTAAGGATTGGGATTATTGATTCCTATTCTCAAGAAAGCAGAAAGTGTATCAGGAGAAATTAGCAACTGTTTGTTGAGAAATGACTTCATGTCAAGCTAGTGTAGAGCTCACTGTGGGACCCCTCTGCCCTGGGAGTCGGATGCCCTCGCTGCTCCGTGGAGCTGGAAACGCACTCAAAGTCGACCCATCTCATCTACACAGAAGCGTGACCGTCAGGGTCTAAATGCCCAATACAGGAACTAGACGAAGTGATCCCAGAGAGAGGGCGATGTGACACAGCTGCAACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17511 lncRNA upstream 31478 24336970 ~ 24338848 (+) True G14136
TU17505 lncRNA upstream 49007 24317800 ~ 24321319 (+) True G14132
TU17414 lncRNA upstream 267309 24080017 ~ 24103017 (+) True G14057
TU17335 lncRNA upstream 425564 23943274 ~ 23944762 (+) False AMCG00016506
TU17326 lncRNA upstream 487380 23880960 ~ 23882946 (+) False AMCG00016502
TU17570 lncRNA downstream 44327 24419358 ~ 24419607 (+) True G14177
TU17791 lncRNA downstream 708742 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 747052 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 769551 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 894807 25269838 ~ 25270195 (+) True G14383
AMCG00016529 mRNA upstream 33499 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016519 mRNA upstream 251953 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016520 mRNA upstream 268761 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016515 mRNA upstream 293040 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016516 mRNA upstream 340370 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016537 mRNA downstream 104675 24479706 ~ 24542799 (+) True AMCG00016537
AMCG00016536 mRNA downstream 194097 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016541 mRNA downstream 206946 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016542 mRNA downstream 226669 24601700 ~ 24617531 (+) True AMCG00016542
AMCG00016540 mRNA downstream 294181 24669212 ~ 24683200 (+) True AMCG00016540
TU17415 other upstream 260144 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7248394 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7884323 16484355 ~ 16486003 (+) True AMCG00016329
TU17581 other downstream 159987 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 632931 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 758167 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 775452 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 775452 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile