RNA id: TU17505


Basic Information

Item Value
RNA id TU17505
length 3496
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G14132
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24317800 ~ 24321319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTGTTCAAAAGGAGACTTTATATCCcagcaaatgaaaatgtgaaattgcaGAGCTGTTTGAAGTGTTTGAAGAGCTCATTCCCACTCCCAGGCTCTTGGATGTTTGCCCTGTAGAGGGAGTCATGCGCACTTCCATACAGAAGGCATGCGATCCAACGCTTGACCACTTTCCAGGCAGCAAAAGCGGAAGTCGTTTCAGTTTTCGCACGTTAAGCATGTGGAAAGGGTCTCGGTGGTGGATGTTTTCCGGTGGGCTGGAGTCGTCACATACCCAGATGCACATTCATACAGAAGGCAGAACAAATTTCTGTGCATTTCTCCagtacaaaaatatttgttagaTGCCAAGTTATTCCGGTTGGTGCTTTTCTAATGCAATTCCAACACATGCAGACGGCACGTTTTCATTGAAGCAGTCTGGACAACCTGCCAGACGCACTCCCAACTATGTCCTCATCTCCTGGAGCTcttggggggaaaataaatcctaataaatgagaacaataataatgatgatgatgttcTAATCCCTTCACATCCAAGAAGGACAATGGCAGTGTGACGATTtccagggagaaaaaaaataagaaaaatgaaaattgctGGATAACACCTCCTATCGATGAGCTGCTTGCATCTAAGAGAGCATCAGCCTCCTCTATGACTCCATGCCCCATGTGTCATTCCTTCCACAACACCCTGATCTGGGTGTGAGTCGTGCATTTACAGCAGGGCCTCACTTTAAGGTGAACTACAACAAGTCCTTCACAGCGCTGATCCAGAAAGTGGTGTCACACATGGGAAGGAAGCCAGGGTCCTGTCCAGAAGATTTCCTGCATTGCCAAATAGTGGTgcgttttttgtttggttttccaaGCTTTAGATGGATTCCTGCACATCCCACAACCCTCAAACAGGGATAAGAGTTCCTGTTGAGCAGTATTAATTCTGTCAAGATCAATCAGCTCCTCAGAAATATGCTGTATCCATCTCCGCTTGAAACTGGGCAGGCTGGTTCAAAGAGTTGCCCAGAAAGTGCAGGGAAGGAGAGGAGCTATGGCTTCATGAGCTTTGCTATCCAATGCTCTGAGGGGTCCGAGTTAGGTTAGGTGTGTAATGATATCCAGGCTTCAGCAGGTAATTTGAATTGGTGTGGGTGGATTTCAGAGTGACAGGAAAAGAAACCACTGgggacgcacacacacaggggacGCAAATGGAAATGGTAAAAGGGgatgaaagaacaaaaataaaaaatatggatataatttagaaaaaagCTCTCCTGGAGAAATTCCTGTTCCTCCTGATTTGCAGTCCACAGACGGATGCTGTGCATGACTCGAGGGAAGAAATCTTGGCGTCCCGTCCGTGAACAGGCTTGGAGGTTCATTAGCACCCTCCTCTGTCGCACAGCTGTACTTGTAGTCTCCCAGTTGGGAACGAGCAAAGCAACTCGGGTAAAGAAAAGAACTTGCTTGAACTTCTAAAACCAGCCTCATTAAACTTGCGCGTGGGGgttaggggggggggaagaggtAGAAATGCCTTAAATTGAGATACCGTACCTGTACCGTGTCATGGAGTGCCGCGTGTCCACTTTGATCGTTAACGTTTCCGTTTGTGCCGCCCCTTCGTCTGTTGTGGAGCTGCCAGTGAGAGGAAGCTTGTGGTGAGGTTTCCTCTGGTTCTTCTTCCCAGTGGTCTTCCCCTGCGGTGGCGGCGGCGCTTTAGACAGGGCTGCTGTACTCCTCAGCTTGTTCACCACCTTCTGCTTGGCAACAGACAGTCGCAAGGAGGCCACGTCTTTCCCGGGCAGCTTGCTGTGCTTCTTGAGCACCTTCTCCGGCTCCCTGTGCTGCGGTGGCGAGGCCTTTGTCCCTCCCACCAGAACCGGCCTCTTCTTCCTCCCCTTCAGCTGGGCCTCGTCCCTGCTGTGAGAGGACGCCGAGCTGCCTTCCGTCTCCCTGCTCCCGAATGACTTGGGCTTCTGAAAGCGATCTGGCATATCCCCCCGCGGGTACTTGAGACTGCGTCCAATCTGGGCATTGGccgagcaggaggaggaggaggaggaggaggaggaggagcggcCTTCACGGCCGCGGCACTTCAGTGGGCGATGGACTTCCCTCCTGGCGTCTCCGGCCCTCTCCTGGTGGTATCTGGGTGAAGAGGGGTCGGCTTTCCATTTCGGGGACCAGTACTGGTGTGTCGCCTCGCCCCACTCtgcatttctattttctgtCGTCTCGCTGTGCTTTCTTAGCTCCCGTTCTGCAGAATACCTGTGTATCCACCATAGACAACAACAAAGATTTGATTACAACTGCAGCAAAAGCCTTTTGCTGGGAGTGCAGGATGTTAGCTTATTTCAGCAAGGTTGAAAGAATGCATTTTTCCCCACATGCCAGACTTTGCTTGGTTTAGATAGGCAGGCCCTTCAGAATTTATCAGTTgactttaatcattaaaaaaaaaaaaaaaaacctccccAGAATGAAAGGTGGTTAAGGCACACAATACACAAAGGTAGGTTAACTGCTCTGCAAATTTTTACacttcaaacacacagaaagaatGACTTTCAATCTGTGATCCTCTGCTGTGTGGCTTAGCCTTTTACCCCACTTTACCCAGGCTGAGCAGGCCGACCCAGGTGCTTCTCCGTATAAGAGATCCTTCCTGGAAATCCTTCCGAAACTCTGGGAGGAGAAAATGAATACCTCCTCTCTCGGGAGTGCCGTGGGCTGAGGTGCAACCCCCCGTTCCACCTCTCCTCCCGGGCCGAGCGATCGAAGGAGTGTGCTCTGGGCCGCTCTCTGCCGGCCCTGGGGCTGCGGCTCCTGCCCCGTGGGGCTCTGTCCGGGCAGTTGCTCCTCTGGTGGTCAGCGGGGGGGCCGGGGCGCCACCGGCCCCCGTCCCGCTCGGGGGAGTGGGCCCTCCTGTGGGCCACAAAGCCGTGGAGAGGTGCTGGGGATGGGGGCCTCCGGTTGCCGGGGGGGCCGTGGAAGTGTCTTGGAGAGGAGGGACGCTGGGTCCGGTTGAAGTTGGGCCCGTGGAACGCGCCTCTGGGTGAGGGCCTCCTGTGAGGAGCAGGTCCATGCGCTGGCCCTGAGGGGGACAGCCTGCgcggtggtggtggggggtgtgcTGGCCTGGGGGGTGAGAGTCTCCGGTGGCTGTGATAAGGCCCTGGTGAGTGGTGCCGGGGCTGGGGGGGGTATCCGTGATACGAGCCCGACTGCACCCTCCACGGGGGGGTGGGCCGATGGAACGGCTCTGCGGGAGCCCTGCGCTCATCCGGCAACATGGGCCTGGCAGCGCTCTTCTCGTAGTGGGAGCCGGGGGCGGGGCCGCTGCCCTTGGGATCTCTCCAGCGGACAGGCCTTCCAGGTTGGGCTCTGTAGTCACGAGACTCCGACCCGCAGGGACCCACGAACGGCATTCCCTCCTGGAGCTCCGGGGCACTTCCGTATGAGCTGGAGTAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17414 lncRNA upstream 214783 24080017 ~ 24103017 (+) True G14057
TU17335 lncRNA upstream 373038 23943274 ~ 23944762 (+) False AMCG00016506
TU17327 lncRNA upstream 434854 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA upstream 434854 23880960 ~ 23882946 (+) False AMCG00016502
TU17308 lncRNA upstream 452000 23862215 ~ 23865800 (+) True G13979
TU17511 lncRNA downstream 15651 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 49007 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA downstream 49007 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA downstream 49007 24370326 ~ 24375031 (+) False G14127
TU17570 lncRNA downstream 98039 24419358 ~ 24419607 (+) True G14177
AMCG00016519 mRNA upstream 199427 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016520 mRNA upstream 216235 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016515 mRNA upstream 240514 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016516 mRNA upstream 287844 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016508 mRNA upstream 344959 23959304 ~ 23972841 (+) True AMCG00016508
AMCG00016529 mRNA downstream 3631 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016537 mRNA downstream 158387 24479706 ~ 24542799 (+) True AMCG00016537
AMCG00016536 mRNA downstream 247809 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016541 mRNA downstream 260658 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016542 mRNA downstream 280381 24601700 ~ 24617531 (+) True AMCG00016542
TU17415 other upstream 207618 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7195868 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7831797 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7831797 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7832652 16484355 ~ 16485148 (+) False AMCG00016329
TU17581 other downstream 213699 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 686643 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 811879 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 829164 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 829164 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile