RNA id: TU17619


Basic Information

Item Value
RNA id TU17619
length 2559
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G14218
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24615787 ~ 24618345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaacttctttattttatttttttacttaagtCTACATGAGTTCCTGTCACAGACTTTAAGGACACCTAGTGCAATTATAGActtctttcatttgaaacacatCACAGGAACTCTAGATTATGTACAAAGTCTTTAATTGAGGCCGTGTTGAAAATTAACAATAtgagtatatatataacaatatataagaacatataaCATATAACGTATAACAGATTTAGGGTCCATGTGTACAATATCAGAACTGAGGATGTGAATGagatattgatgttttaatcctggGGTCAACATATATTAGATCAAGAGCAATCAcaccagtttattttaaaatgtgacccTGAAAATTAGTTGCATAACACACCTTGTAATTGATCTATTTCAGATCATTTTAGTTCACTGgccttttttaaaacatttgtgtccctttgttttccttttagtaTGTAACATATGGTGAGACAtaccatattattttaatatttgtaatttatcaGTTAGATACCTTCATGTTTATGACTTGGCGTGTGTGACGATGGTTAACAtagctttacattttgtttcagctgcCCTCTTCTGGCCTCTACCAGACATTGCAGGAGAATGAGTTGCGGAGCTGCAAGACAAGGACTCCAATGCTTGTCCAGTTTGCTAGTGTTAAAACTTGCCAGTTTCTCCTTTTTCTATTCGTTGTCCCACACAGATGACCACCCTGTCTCAGATAATTAAAGTGTCAGTGTATGGCACAGCAGAAGgaaacataatattattattattattattattattattattaataataataataataatgggtcaaTTCATATGGCTTATTGCCTTGGTTGGAAAGTCAAAAATAGGTAcggcaaatacaaatacacatatagAAAGATAGAAATAAACTAATCAGAGGAAGTTAATCTAAGTTaatctgttgttgttgatctAAATTATTAACTCCAGATCAGGTTTTCAAAGTGTTACGGCTGTGTATGTGGGCGTCAGAATGACTCGTACTCTGCTGCTTGCACGGCGGAGGCTGGCTGCACTATATCAGGCACAGGCTCGGTGCCTAAGCCTTACACATAAAAGTACAGTAGATGTTCATGGCTGATTGCCAAGCTCCTCTGGCTGACTGTAAAACCTATTATACAGTACGACAGACTGGTCACTTCAAAGGAGCCAGGAACCTGCTTGGTGAATAAACTGACCGACTccacatgtttttaattctctCTGCCTGGCAAGACTCTCACTCTTCGAACTTCTcaatcaagaaattaaaattgaaaacagcTCTGGCACAACAGACCCCAGCGCTCTGCCCTTCTGGCAGCAGAACCTCCATTGGCTGGAAATGGCATTCTATAAACttgagttttatattttatatatagtattgttaaaaaaaagattacagtTAAATCTACACCGCTCTTTTAAACCGAGAGCATAGCATGTATTCAGGAGGGGTTATGGGACAAAAAGAAGAGGATACTCACACTGAGAGTGGATGGCCACAGCAGTGCCCTGAATTTCAAAGCTGCTGTATTGgactacaaatgtatatttctgtgcCGAATTTCTGTGCACCAGGCACAACTCTCAGCACCGACCCAGACCTGTGTCAGAAAGCTACCTGAAAAACACCTCAGCTTTTCATGTCTGCGATCCGGATTATTCTCCTCCCTCTAACGCTTCCAAACAACAACCTGCTGTCTGGCGCTTGATGATGTTAAAGCCAACAAGGCGAACCTCATGTCCAGCAAAGGCAGCCGGTACCCATCTCCAATACATTCCTTGGGGGACAGGAAGTCGCAGTTGTCTGGTGTGCAAATGTTCTCCTTTACCAGTTTCCTGTTCCTTAAGAAAGCCTTGAGGACTTTACAATATcgattttaaatggatttattAATGGTTTGTATCTCAAGTCTTAAATGAATCCTTCTCTATTAAGGTGGATTATACTCTACCTACATACtgttacaaatttaaaaaactaaacaaaataaataaatccgtATTGGTTGCACTGACACAAAAGTTCACTTCTTATTCTTACAGAACATCAAGTAGAAAACTACCTAAACAAAGGCAATTACAAAAATGCCATAaacactataatatatatataatataccatAAAAATGCTAAAGTAGATTTTAATATTAAGACAGTTGCTCAATTTCTTTGCTGAGGTTACAGTGTATTGCGGAGTCAGATGTCCAAGTTGCAACTGCTGGCTCCTGGCAGGTGAACTAATCGCTACCAGATTCGACAGGACTCTGAGCCGCGGTTCATCACGGAGGTCTCTGGGCAGTTGAAGGCTTTTCTGAACTCCTCATAGTTGCTCATGGCCCCTATTACTCTggatgaacagaagaaaaaagaaaaaaagtcgaTCACTttgaacaacaacagaaaaacaaacaaacaacaggaaaaaattgaaaaaaaaaaacataaaatgtccAGAATAAGAAACAACAGTTCAAGTGTCAGTTGTGCCTGGAACGGAGTCAAACGTTTTCAATCCATGTGGCAATAAATCACGCGGTG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17615 lncRNA downstream 9466 24606108 ~ 24606321 (-) True G14214
TU17614 lncRNA downstream 13780 24601698 ~ 24602007 (-) True G14213
TU17593 lncRNA downstream 49109 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA downstream 49109 24553692 ~ 24566678 (-) False AMCG00016538
TU17574 lncRNA downstream 190289 24425164 ~ 24425498 (-) True G14181
TU17623 lncRNA upstream 64720 24683065 ~ 24684535 (-) True G14222
TU17653 lncRNA upstream 98381 24716726 ~ 24780266 (-) True G14245
TU17733 lncRNA upstream 286776 24905121 ~ 24906546 (-) True G14311
TU17761 lncRNA upstream 389629 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 389811 25008156 ~ 25011255 (-) False AMCG00016562
AMCG00016538 mRNA downstream 48831 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016539 mRNA downstream 65662 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016534 mRNA downstream 222932 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016535 mRNA downstream 239980 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016532 mRNA downstream 252749 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016546 mRNA upstream 102844 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016545 mRNA upstream 144224 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016550 mRNA upstream 171803 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016551 mRNA upstream 184391 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016552 mRNA upstream 257519 24875864 ~ 24878227 (-) True AMCG00016552
TU17551 other downstream 298985 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 298985 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 915532 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1159976 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4480240 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 262803 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 392996 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 394019 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 462223 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 655319 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile