RNA id: TU17758


Basic Information

Item Value
RNA id TU17758
length 2726
RNA type TUCP
GC content 0.39
exon number 1
gene id G14326
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25007962 ~ 25010687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCCTTTTATCTAATTAAATTAGCATCGAATACATATTTATAGGTTTCTGAAACATCATACCAGATGAGCCTGTGGGGAGTTCCCAGAGGCAGCTGAAGAGTTTAAAAAGGTAGatattcagagagagagagagagagagagagagatcttcaACACTTTCAACATACATTCCAATCATCCCTTCATCATGACCCCAGCATCAGCGCAGATGGACAGGGGGCAGGCTAAAGCAACAAGACAAGAGGACAAGGCTCCTGGCTTCACCTCTGCTCTTAACACGGACTACAGCATGCATGTAGAAAACGGGGGCAGTTGCTAAAATCAGtgctcattttaaacatttaagaacTCCCTTCCCCCATGATACCTTATTGTGACTGCAAAAGCCaaccagtggaaaataaatgggGACATTTGCATCCTTGTTTGCTCCCTGCCACCCATTATAAAAATGCCTGCAAGTCTTTAAGGCAGTGGTCTACGCAGGGAAATCCCTTTTCAACTTCAGGGATAGTCCTAATAATGCAGATAATGCCCTCTTGTGGTGCTTTTGTGATCCTGCACATGAAACACACAACCTTGGGGTTCCCAGGTCACACTGTAAAGCACAGTGCCTATGACCCAGATAGACAGTTAACCAATCACGCCTTAACAAAATGTTGATCCAGATATGGTTTGAAAGGGTGCAAGTTCACTCACTGGAATCTACCCACCCATTCCGAACAAACAAACCCAACACAAGAACGAGGGACAATACTGGTGCAATTTTCCtatgtgtttaataaataaccTGAAAGGGAGAGCCCCACTGGCCCTGATGAAACATGGTTCAGGCAGTCTGCATTCCTGCCTTACAGACGGTGAGCGTGGAGGACTCTGCACCATAGAATTGGATCTTTCACAACGAACACAGGACGCCATGTCCCGAACAGTAGTGTGGATTAAGAACAGATACAgaaatcataatacaaataaaataaaagggtcAGGCTTGCGAACTGCAGTCTCTCACAGGTGTTTTGCCCAAGTGCCTGCAGGGCCCCCTGACACATCCCGACTGGAGAACAGACCCCAGCAGGCGCACAGGATAGCACCCCAGACCCCGAGGTGCTCGCCAACGTCTCCCGGCCGGCGGTCCACTCAGACCAGCGCTGTGCCAGCCACTGTCCTCCCGGCCAAATCCCCACAGGCTCAATACACAGGGGGGTCTAGATCAACACCTTCATTAGACCCAGGAGAGTGCAGAGGGGTTTACtcaattgaataattaatttaataaattggCATGGAATGGGCGGCAGTTCAGGCTACATGAGGCCTGTGTTAGATGAACAGGGATTCAGACCGTCAAGTGCTGTAATGGTACACTcgtaattaaaacattacaaataactgtaaaattaaaccattaaaaaaagttcAAGTCACTGGGTTTTAGTTGGCCCTGCAGCAAGCGCATCTCCCAGAAGGACGACACTCAGCCCATACTGGCATGTCACCAGCAAGCATCTTCCGCTGCCCTCTGCCCTCAAACGTGGCGCACAGCTACTGCCCTAGAGGGAACCATCTAGACGGAGTGGGCACACAATGTCCAGGAAGTACACAGCCCCGGAGCCGTGCTCTGGAGCCCCCTGGCCTGGGCTCCGGCCCTCACTGCCTCCACACTTGCCCTAGAGGTCTCATCCTGCCTCTCCAGGACGTCAAGGACAACGTTTGGAATTTGTAACCACGAACTCTTTGCAGGTTATGTCTGAACCCGGGTGACCTGGCTGCTAATGAGCAGGGAAATCAATGCAGAGCTTTCTGCCCCATTTATATCCTCCTAGACAGCCAATCAGCACAGCGATAGGGAGCTGGTCAGGCGCCACACAGGGGCTGGACTCTGGCCATCACTCCGCGCCACCGTTCTACGAGGCTGCATTGTGGATATTTCCTCTCTGCTCCATGTGCTGGGAAAATCAATACAGCTCTATTAGGCAGCAATCCTGCCAACAGCGCCGGCTGATCGGCAGGTCACACTCTGACTGGACCCCAGGGTCACCaggggttaaaaataaataaaaccaaacaaaaggaaataaaagaaacactACAGTCTTCAAGCTTCAGGAATTTCTACCTTCGTTAAGAATGAGACAGGAGGCCAACGGTGTCCGTGTGAAACTGTTCAACGTGCCTTCCAGCTGAACCGAGGGCTGGGCGTCCAAGACTGGCAGCCCTGCGTGTCGTGTGTCTGGAGTTTGAAATGAAGCAGAGATGGAGGGGACTTAAACCCGTTAATcctactgttttattgttattgttgttgtaatggTCCAAAGAGGACAGTCACTATTTAATGTATTCCAGATCAGACTTGGGTTTGTTTATAGTCTCTGTGACCTAAAACCTAAAccattattttcagtaatatgttAATGTCAAGGTTACACACTAGGTGTCTGTTTGCTAGcgtcttttagtttttttagttcCTCTGATAAAACCTGTAACAATCGACCTCTATGAAGCAGCACAGGAATGAAAAGTGAAGCTGGGAAGATATTCTGTAGTAAACGGATGcatctaaagaaagaaaagggaaaaaaaaaagagagggaaaaaaaacaactcaaaaaaacaaaactaaaaagtctaaaaaaatatactttagtTTCCTCCTGTcgtgttgtattgtgttgcatGTCCTTGTTTGTTTCTCATATGTTTTTGGTTCTACCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 588355 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 632135 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 632135 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 632931 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 669114 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 73086 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 111396 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 133895 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 259151 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 347200 25357887 ~ 25359035 (+) True G14444
AMCG00016553 mRNA upstream 87926 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016554 mRNA upstream 97948 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016549 mRNA upstream 141538 24825609 ~ 24866424 (+) True AMCG00016549
AMCG00016548 mRNA upstream 184450 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016544 mRNA upstream 246853 24743346 ~ 24761109 (+) True AMCG00016544
AMCG00016561 mRNA downstream 5353 25016040 ~ 25020221 (+) True AMCG00016561
AMCG00016559 mRNA downstream 10158 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016557 mRNA downstream 24251 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016558 mRNA downstream 69987 25080674 ~ 25085097 (+) True AMCG00016558
AMCG00016560 mRNA downstream 76924 25087611 ~ 25088937 (+) True AMCG00016560
TU17581 other upstream 446155 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 897780 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7886030 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 8521959 16484355 ~ 16486003 (+) True AMCG00016329
TU17806 other downstream 122511 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 139796 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 139796 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 139796 25150483 ~ 25157461 (+) True AMCG00016566
TU17920 other downstream 359609 25370296 ~ 25391840 (+) False AMCG00016584

Expression Profile