RNA id: TU17806



Basic Information


Item Value
RNA id TU17806
length 682
RNA type TUCP
GC content 0.63
exon number 1
gene id G14361
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25133198 ~ 25133879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTGCGTTTGAGGTGGGCCTCCAGGTCGCAGCGGGGCATGGCATCGGGGCAGGAGGGCGCGGCCAGCGGGCAGGACACGGGCAGCTTGTCTAGCAGCTTGTGCACCAGGATGCTGGACTTCCTGCACAGTCTGAAGTGCAGCTTCTTGCGGTCCAGGGGACAGAAGTCCTTCTCCTGCAGGAAGTTGCGCAGGCACTTGAAGCAGAAGGTGTGTCCGCAGGGCGTGTCCAGGGGCTGCACCAGCGGCTGCAGACAGATGTGGCACACAAGGTCGTCGTCCACCTCGTGACGGTAGTTGTACAGGTGGTTCTCTCGGCTCCAGTGCTGCTGCCCGCAGTCCAGGCACAGAGGGTTCAGGGCCGGGTCCTGCTCCACCGACCCCACTTCCGCGTTGGCAGTGCCCATCATGCCCCAGCACAGCGctgccctctccctcctctctctccttcttcttcctcctcctcttcctcctcctcctcgtccgcGGCCAGAGAGTGCACCTCACTGCCCCCCCCGGCCACGGCCCTCcatcgctctctctcacactgctTTTGTCAACGGGCCGAGCAGACCTCTTGCTGGGGCCGACTGCCTCATAGTCCTGGAAAGAGAGCGAGAAACACACATCAGCACAGAGCTGGAGGAACGGACGGGAACAGACGGATACAGAGCTGGAAGAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17796 lncRNA upstream 10806 25122083 ~ 25122392 (+) True G14354
TU17791 lncRNA upstream 48111 25083773 ~ 25085087 (+) False AMCG00016558
TU17570 lncRNA upstream 713591 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 757371 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 757371 24370326 ~ 24375827 (+) False G14127
TU17808 lncRNA downstream 10703 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 135959 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 224008 25357887 ~ 25359035 (+) True G14444
TU17914 lncRNA downstream 226592 25360471 ~ 25360808 (+) True G14445
TU17917 lncRNA downstream 230017 25363896 ~ 25366376 (+) True G14448
AMCG00016568 mRNA upstream 27028 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016560 mRNA upstream 44261 25087611 ~ 25088937 (+) True AMCG00016560
AMCG00016558 mRNA upstream 48101 25080674 ~ 25085097 (+) True AMCG00016558
AMCG00016557 mRNA upstream 83646 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016559 mRNA upstream 102145 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016566 mRNA downstream 16469 25150348 ~ 25157447 (+) False AMCG00016566
AMCG00016567 mRNA downstream 48352 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016576 mRNA downstream 66263 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016571 mRNA downstream 108135 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016584 mRNA downstream 251191 25385070 ~ 25404840 (+) True AMCG00016584
TU17758 other upstream 122511 25007962 ~ 25010687 (+) True G14326
TU17581 other upstream 571391 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 1023016 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 8011266 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8647195 16484355 ~ 16486003 (+) False AMCG00016329
TU17809 other downstream 16604 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 16604 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 16604 25150483 ~ 25157461 (+) True AMCG00016566
TU17920 other downstream 236417 25370296 ~ 25391840 (+) False AMCG00016584
TU18026 other downstream 591969 25725848 ~ 25740558 (+) False AMCG00016598

Expression Profile