RNA id: TU17836


Basic Information

Item Value
RNA id TU17836
length 358
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G14383
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25269838 ~ 25270195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTACTGCCCCGTAATTTCCCTCACTGTTTTAATCTTTGTCTATTATCTCAATGGTGAGAATAACATGTCTAGTGTGAACACTGAGAGGAAGGCCGGTcattaaagacacacacactgctgctctACTGACACTCTGAGTTCCCTAATCCCACATCGCTTCAGACTTTtttcacacagaaaaatgtaaagctcTGTAAAGCACATCTGCCTGAAACATTTGGCCATTACCCCAGACTGCCAGCGCTGTGGAAACTGAGCCGGGGTCCCAGCAGCTCGCCTGCTGCAGTTCCCTCCCCCGAGGATGGGGCAGCGCTGCTCGGGGACAGGACAGTGTTCAGGGGGATGTAATCCTTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17808 lncRNA upstream 125056 25144582 ~ 25144782 (+) True G14363
TU17796 lncRNA upstream 147446 25122083 ~ 25122392 (+) True G14354
TU17791 lncRNA upstream 184751 25083773 ~ 25085087 (+) False AMCG00016558
TU17570 lncRNA upstream 850231 24419358 ~ 24419607 (+) True G14177
TU17497 lncRNA upstream 894011 24370326 ~ 24375827 (+) False G14127
TU17913 lncRNA downstream 87692 25357887 ~ 25359035 (+) True G14444
TU17914 lncRNA downstream 90276 25360471 ~ 25360808 (+) True G14445
TU17917 lncRNA downstream 93701 25363896 ~ 25366376 (+) True G14448
TU17932 lncRNA downstream 152248 25422443 ~ 25423026 (+) True G14455
TU18004 lncRNA downstream 334444 25604639 ~ 25611689 (+) True G14502
AMCG00016571 mRNA upstream 7382 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016576 mRNA upstream 69298 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016567 mRNA upstream 86606 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016566 mRNA upstream 112391 25150348 ~ 25157447 (+) False AMCG00016566
AMCG00016568 mRNA upstream 163668 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016584 mRNA downstream 114875 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016585 mRNA downstream 137032 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016588 mRNA downstream 245284 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016587 mRNA downstream 263854 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016586 mRNA downstream 283285 25553480 ~ 25559207 (+) True AMCG00016586
TU17809 other upstream 112377 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 112377 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 112377 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 135959 25133198 ~ 25133879 (+) True G14361
TU17758 other upstream 259151 25007962 ~ 25010687 (+) True G14326
TU17920 other downstream 100101 25370296 ~ 25391840 (+) False AMCG00016584
TU18026 other downstream 455653 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 670333 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 670333 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 1015668 26285863 ~ 26289222 (+) False AMCG00016625

Expression Profile