RNA id: TU17849


Basic Information

Item Value
RNA id TU17849
length 2119
RNA type TUCP
GC content 0.46
exon number 3
gene id G14392
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25080568 ~ 25083699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCATTTCCGAGTctagagaaacacacacaggcaaccGGACATTTGTGTGAACGTGTTTATTGGGTGTGCGGGACAGTTAGGCCATGAACTCGTAGGGGATGGGCTCCAGCAGCTGGGGCTCGTTGTTCTTGGTGCTGACAAAGTGAGCCTCACGGGGAGCAGCCGCTGGCGTTTAAGCTCCACCCAGGTGCCACTCTCCTTGGCCTCgatcttcttcttctcattctCCTTCACTCGCTGCAGGAAGCTGTCCCTGCTCTTTGAGTGCTTCACGTGCTCAATGCGCACGTTGATTCTCTTGGCCAGGATCTTGCCTTGACCTGCTTGTTGACAATGATGCCCACAGCATGCTGGGTCACATTGTAAATCCTGCCAGTCTTGCCATGGTAGCACTTGTGGGGCATTCCCttctggactgtccctgttccCTGGAAGATAAACTCATCTTACTGGAAGCAAGCATTAGCTTCCCCACATTCAGTGCTTACTCCAAGCTGGGCTTTAAGTCAGCAATTGTGTTTTTCCCACCCCTCTCTTTTCTTCCCTGTATCTCAAATGCAAAAGCTCTCAGAACCGGTGAAATGATTTGCTCATTTTGTCTAAAAGGCAATCGTAGGAGACTATCATCATCGAGCTTCTGTGTGTATCGGATGAGGCACCTGCTCGGTCCGCAAATCACTACGTACCTTGATGTCAACGATATCTCCTTTCTTGTAGATACGCATGTAAGTGGACAGAGGGACGGGACCTGCagcacaaagcaaaaatgattAACCTCAGCCTCGATCAAAGACAGCACCACTTTAAAGACTTACACCGATTAGAAGATGCAGAAAGAGCACTAGGAGGCTCAGCAGGCTATGGAAACAGCGTTCAAGCTGCTCATAGTCAGTTCAGTCTACACATTGGGGTACTCACCATGTTTACGGAAGGGCCTGGCGAACATATACCTCGTCCCCCTCCTCTTGCCTCTGGTGTTCGTCATGTTGGCTGTTTAACTgaaataaggaaacaaaatcacaccTGTTAACACTTAAAAGGAACACCACGGCAATGACACCATGGAGACGGAGAGGAAACGCAGATGTTGACCGATTTAATAAGATCAACTTCTTCGTGGTCGACGTACTGTACACGTCACTGTGGAAGAGCGGAAACCGGCGATTCGGATAACTATTCCAGAACATGAAATTCGGATTCACTGCGCATGACACGGTCCGGGTGGATTCTACTGCACAGGCAGAAAATCAACACATGATAACTAACTACTGAAGACCTTCATTTCTGTCAGGGCGATCCGAGTCATATTACAACCACACCCCAGTTAGAAATTGTATATACCTACACACATCACGGCAATGTACTATTATGACCTAAAAAGTAgtagtttataaataaaacattaatctgCGTCCACCTAAAATCTTACCACTTCCAAACAAGAACATAAATCAGTGATTTCACTACGTGTGCCATTCGCGTTGTGTGTGGCTTAGAGAAGTTTGATAACTAACAGAACTTGGAAGTGAAAAATTACATCCAAACCactaaaaaaaagtgtatttgtaaCTCACTGACAGAGTTACAAAGGGATCTGCAAAGACAAATTAgattaatataatcataaacACTCAGGCCGTTTTCTTCCAAGGCCCACATGGCGAGCCATGCAGACAGGCTGGCGGGGCATCAGTGCTCAATAACAGGCACATTACTAACTTTCGGCCGCGGTTGGAAAGACAGACCAACGCAATGTGTGCTTAAACTGTGCCTGCATTAAATCTAACGAAATCCACTCAATTGTGCAGGTATTAGCGAtgataattttaaacaaatcgGGAGCTCTTCCTACCCCTGCTTCTTCGCAAGATGGCGGGTCCGGCGGAAAGAGAGAGTGCAGGACCCCTCGCTCCGCCTTACACATTGTAATTCAGGTGGTCCTCACTGCCGCCTGACTAGAAAATACACATACTTCTCAATCGCCGTGATTCACTCTCCTGcgctgaataataataataatatctggcTGCGTGTTGATATGCTACATTGCTTGAAAAGCTTTcaaatttatgttttaatttgtattattgaagGACCCACTACAGCTGTCACATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17761 lncRNA downstream 69313 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 69313 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 69805 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 174022 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 300302 24716726 ~ 24780266 (-) True G14245
TU17860 lncRNA upstream 38391 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 321196 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 329617 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 433290 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 433290 25516989 ~ 25520096 (-) False G14487
AMCG00016563 mRNA downstream 75 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016565 mRNA downstream 22998 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016562 mRNA downstream 67090 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016564 mRNA downstream 79113 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016556 mRNA downstream 126935 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016570 mRNA upstream 22633 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016569 mRNA upstream 41084 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016573 mRNA upstream 131368 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016572 mRNA upstream 136605 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016574 mRNA upstream 140366 25224065 ~ 25234275 (-) True AMCG00016574
TU17768 other downstream 65225 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 68790 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 198470 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 763766 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 763766 24311037 ~ 24316802 (-) False AMCG00016531
TU17858 other upstream 189965 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 669296 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 997804 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 1072822 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 1098045 26181744 ~ 26184778 (-) False G14676

Expression Profile