RNA id: TU17860


Basic Information

Item Value
RNA id TU17860
length 286
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G14400
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25122090 ~ 25122375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccacattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17761 lncRNA downstream 110835 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 110835 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 111327 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 215544 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 341824 24716726 ~ 24780266 (-) True G14245
TU17952 lncRNA upstream 282520 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 290941 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 394614 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 394614 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 420671 25543046 ~ 25545725 (-) True G14496
AMCG00016570 mRNA downstream 14525 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016563 mRNA downstream 41597 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016565 mRNA downstream 64520 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016562 mRNA downstream 108612 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016564 mRNA downstream 120635 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016569 mRNA upstream 2408 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016573 mRNA upstream 92692 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016572 mRNA upstream 97929 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016574 mRNA upstream 101690 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016575 mRNA upstream 112617 25234992 ~ 25237511 (-) True AMCG00016575
TU17849 other downstream 38391 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 106747 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 110312 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 239992 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 805288 24311037 ~ 24316802 (-) False AMCG00016531
TU17858 other upstream 151289 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 630620 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 959128 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 1034146 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 1059369 26181744 ~ 26184778 (-) False G14676

Expression Profile