RNA id: TU17932



Basic Information


Item Value
RNA id TU17932
length 584
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G14455
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25422443 ~ 25423026 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CATGGAGGTCATGGGAAAGGGAATGTGACACGTCCAGTGAATACTTTAACTCATCAAAGCCATCTATTATAAAGAGGATCTTCTCTGAAGAACACAGGATTTCTGTGACAACTGGCGCCAAGTGCTGACTGTTGTTCAGAATTAGATTAACAACACTTATGTTTTCGCCAATGAGATTAAGCTGTCGGCACTTTATGTGGAAGATGTACAAAAAAATCTCAGAATAAAGTTTCCCAGATGCCCaatcaaacattattttctgtgctgtAAAAGACTTTCCAATTCCTGCCTGACCCTGTAATATCACAGTTCTCCGTACTGCTCCATTCTCATCTGGATCAAACAGGTTTTCCACACTAGTGCTCATGAATTCGTCACAGTTTCTCTTATTCATGACTTCCTGAAAGGAGTCTCCTCTGCAACGTAGCTCCTCTTCCCTTTCCTTCTGTTGACGATGCTTCTGTATTATCAGCAGTTTCGTGTACCGATTCTCCAGCTGCACGTCCTCCCCGGGGAGGTGGTTGTACTCCTGCACTGTACTATATTCACATCTGACCCATTCCTGATATTTCTTCCCGAGCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17917 lncRNA upstream 56067 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 61635 25360471 ~ 25360808 (+) True G14445
TU17913 lncRNA upstream 63408 25357887 ~ 25359035 (+) True G14444
TU17836 lncRNA upstream 152248 25269838 ~ 25270195 (+) True G14383
TU17808 lncRNA upstream 277661 25144582 ~ 25144782 (+) True G14363
TU18004 lncRNA downstream 181613 25604639 ~ 25611689 (+) True G14502
TU18012 lncRNA downstream 249233 25672259 ~ 25678349 (+) True G14510
TU18082 lncRNA downstream 510925 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 742604 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 790268 26213294 ~ 26215317 (+) True G14695
AMCG00016585 mRNA upstream 13537 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016584 mRNA upstream 17603 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016571 mRNA upstream 159987 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016576 mRNA upstream 221903 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016567 mRNA upstream 239211 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016588 mRNA downstream 92453 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016587 mRNA downstream 111023 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016586 mRNA downstream 130454 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016598 mRNA downstream 302227 25725253 ~ 25758926 (+) True AMCG00016598
AMCG00016603 mRNA downstream 456320 25879346 ~ 25887229 (+) True AMCG00016603
TU17920 other upstream 30603 25370296 ~ 25391840 (+) False AMCG00016584
TU17809 other upstream 264982 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 264982 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 264982 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 288564 25133198 ~ 25133879 (+) True G14361
TU18026 other downstream 302822 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 517502 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 517502 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 862837 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 1004313 26427339 ~ 26432356 (+) True AMCG00016633

Expression Profile