RNA id: TU17979


Basic Information

Item Value
RNA id TU17979
length 712
lncRNA type inter_gene
GC content 0.54
exon number 5
gene id G14487
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25516989 ~ 25520096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTGTGTCTTTCTGTACACTTTATTAACGAAGAGAAAGTGGGGACAAGGCTCATTTCTTGGTCTCCTCTTCCTTGGACAGAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGACGCTCCTCGCGACGCTTGCGAGCTTCCTTGGTCTTGGAGCGGCGAGCCTCTGCCTGGTCACCAGGAGCTTCTTGCGAGCCTTGTCTGCCTTCAGCTTGTGAATGtgctccatcaggatgcgcttGTTCTTGAAGACGTTTCCCTTAACCTTCAGATACAGACTGTGGTAATGTGGCGATCGATCTTCTTGGACTCCCGGTAACGGCGCAGCAGACGGCGCAGAATTCGCATGCGGCGCATCCACGACAGCTTCTCTGGCATACGGGCGTTGGCAGTACCCTTCCTCTTACAATGCCCATGTGGCGGCCCTTACGGCGCGCCAGCATGTTCTTGCGACAGCGGGCACGTGAATGCACAGTCACTGGCTTCCTGATGATCAGACCATCCTTCACCAGCTTCCTGATCTGCTGTCGGAGTTGGCATTGGCGATCTCATTGGTCTCGTTGGGGTCGAGCCACACCTTCTTCTTGCCACAGCGGAGGACGCTGGACGCCAGCCGCTTCTGAAGCCTGAGCATGCTGGAAATGAGGGATGGACAGagttgttaatgtttttaaagtcaaatgCCAACCATTATATGCCATTCGAGCACAAGAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17955 lncRNA downstream 102891 25413316 ~ 25414098 (-) False AMCG00016591
TU17952 lncRNA downstream 111888 25404895 ~ 25405101 (-) True G14472
TU17860 lncRNA downstream 394614 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 505734 25007974 ~ 25011255 (-) True AMCG00016562
TU17998 lncRNA upstream 22950 25543046 ~ 25545725 (-) True G14496
TU18009 lncRNA upstream 84684 25604780 ~ 25609059 (-) True G14507
TU18019 lncRNA upstream 152208 25672304 ~ 25675200 (-) True G14517
TU18107 lncRNA upstream 397934 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 451690 25971786 ~ 26022263 (-) True G14585
AMCG00016594 mRNA downstream 33279 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 67237 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 78214 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016590 mRNA downstream 93330 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016591 mRNA downstream 96618 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016597 mRNA upstream 91467 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016600 mRNA upstream 156473 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016599 mRNA upstream 185985 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016601 mRNA upstream 304650 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 584820 26104916 ~ 26117450 (-) True AMCG00016614
TU17858 other downstream 239511 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 433290 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 501646 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 505211 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 634891 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 232899 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 561407 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 636425 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 661648 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 661648 26181744 ~ 26184778 (-) True G14676

Expression Profile